YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73987018
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGGPGDAER RQRWGRLFEE LDSNKDGRVD VRELRQGLAR LGGGDPDRDT QQGISSEGDA  60
   61 DPGGGLDLEE FSRYLQEREQ RLLLLFHSLD RNQDGHIDVS EIQQSFRALG ISISLEQAEK 120
  121 ILHSMDRDGT MTIDWQEWRD HFLLHSLENV EDVVYFWKHS TVLDIGECLT VPDEFSEQEK 180
  181 LTGMWWKQLV AGAVAGAVSR TGTAPLDRLK VFMQVHASKT NKLNILGGLK SMIREGGMRS 240
  241 LWRGNGINVL KIAPESAIKF MAYEQIKRAI RGQQETLHVQ ERFVAGSLAG ATAQTIIYPM 300
  301 EVLKTRLTLR RTGQYKGLLD CAWQILEREG PRAFYRGYLP NVLGIIPYAG IDLAVYETLK 360
  361 NRWLQQYSRD SADPGILVLL ACGTISSTCG QIASYPLALV RTRMQAQASI EGAPQLSMLG 420
  421 LLRHILSQEG VWGLYRGIAP NFMKVIPAVS ISYVVYENMK QALGVTSR

Type	Start	End	Confidence
Non-Cytoplasmic	1	375	0.75
Transmembrane Helix	376	398	0.58
Cytoplasmic	399	468	0.47