YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73986654
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSQFYGYLS QQQNMMQDYV RTGTYQRAIL QNHTDFKDKI VLDVGCGSGI LSFFAAQAGA  60
   61 RKIYAVEAST MAQHAEVLVK SNNLTERIVV IPGKVEEVSL PEQVDIIISE PMGYMLFNER 120
  121 MLESYLHAKK YLRPGGNMFP TIGDVHLAPF TDEQLYMEQF TKANFWYQPS FHGVDLSALR 180
  181 GAAVDEYFRQ PVVDTFDIRI LMAKSVKYTV NFLEAKEGDL HRIEIPFKFH MLHSGLVHGL 240
  241 AFWFDVAFIG SIMTVWLSTA PTEPLTHWYQ VRCLFQSPLF AKAGDTLSGT CLLIANKRQS 300
  301 YDISIVAQVD QTGSKSSNLL DLKNPFFRYT GTTPSPPPGS HYTSPSENMW NTGSTYNLSS 360
  361 GMAVAGMPTA YDLSSVIAGG SSVGHNNLIP LANTGIVNHT HSRMGSIMST GIVQGSSGAQ 420
  421 GSSGGGSSAH YAVNSQFTMG GPAISMASPM SIPTNTMHYG S

Type	Start	End	Confidence
Cytoplasmic	1	235	0.69
Transmembrane Helix	236	257	0.76
Non-Cytoplasmic	258	461	0.72