YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73986253
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.52
Transmembrane Helix	30	47	0.63
Non-Cytoplasmic	48	53	0.46
Transmembrane Helix	54	77	0.78
Cytoplasmic	78	110	0.73
Transmembrane Helix	111	130	0.48
Non-Cytoplasmic	131	137	0.44
Transmembrane Helix	138	156	0.57
Cytoplasmic	157	164	0.79
Transmembrane Helix	165	182	0.96
Non-Cytoplasmic	183	188	0.77
Transmembrane Helix	189	208	0.94
Cytoplasmic	209	219	0.91
Transmembrane Helix	220	241	0.87
Non-Cytoplasmic	242	259	0.82
Transmembrane Helix	260	283	0.84
Cytoplasmic	284	299	0.69
Transmembrane Helix	300	332	0.56
Non-Cytoplasmic	333	410	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAAVGAG AGAGGPGAAG GGGAREGARV AALCLLWYAL SAGGNVVNKV ILSAFPFPVT  60
   61 VSLCHILALC AGLPPLLRAW RVPPAPPVSG PGPGPHPSPG PLLPPRFYPR YVLPLAFGKY 120
  121 FASVSAHVSI WKVPVSYAHT VKATMPIWVV LLSRIIMKEK QSTKVYLSLI PIISGVLLAT 180
  181 VTELSFDMWG LISALAATLC FSLQNIFSKK VLRDSRIHHL RLLNILGCHA VFFMIPTWVL 240
  241 VDLSAFLVSS DLTYVSQWPW TLLLLAVSGF CNFAQNVIAF SILNLISPLS YSVANATKRI 300
  301 MVITVSLIML QNPVTSTNVL GMMTAILGVF LYNKTKYDAN QQARKHLLPV TTGDLSSKEH 360
  361 HRNPLEKPHN GILFPQHGDY QYGRSNILTD HFQYSRQSYP NSYSLNRYDV