YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73985811
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATTYERLK LHVTPEKFYV EACDDGADDV LVIDRVSTEV TLSVKKDIPP SAVTRPIFGI  60
   61 LGTIHLVAGN YLIVITKKTK IGEFFNHVIW KATDFDILSY KKTMLHLTDI QLQDNKTFLA 120
  121 MINHVLNVDG FYFSTTYDLT HTLQRLSNTS PEFQEMSLLE RADQRFVWNG HLLREFSAQP 180
  181 EVHRFALPVL HGFITMHSCS INGKYFDWIL ISRRSCFRAG VRYYVRGIDS EGHAANFVET 240
  241 EQIVHYNGSR ASFVQTRGSI PVFWSQRPNL KYKPQPLINK VANHMDGFQR HFDSQVIIYG 300
  301 KQVIINLVNQ KGSEKPLEQA FATMVSSLAS GMIRYVAFDF HKECKNMRWD RLSILLDQVA 360
  361 EIQDELSYFL VDSAGMVVTS QEGVFRSNCM DCLDRTNVIQ SLLARRSLQA QLQRLGVLHV 420
  421 GQKLEEQNEF EKIYKNAWAD NANACAKQYA GTGALKTDFT RTGKRTQLGL LMDGWNSMIR 480
  481 YYKNNFSDGF RQDSIDLFLG NYSVDELESH SPLSVPRDLK FLALPIIMVV AFSMCIICLL 540
  541 MAGDTWTETL AYVLFWGVAS IGTFFIILYN GKDFVDAPRL VQKEKMD

Type	Start	End	Confidence
Non-Cytoplasmic	1	319	0.75
Transmembrane Helix	320	338	0.47
Cytoplasmic	339	520	0.72
Transmembrane Helix	521	543	0.94
Non-Cytoplasmic	544	549	0.64
Transmembrane Helix	550	571	0.91
Cytoplasmic	572	587	0.70