YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73985162
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACGAYGPEH WVTSSVSCGG RHQSPIDILD QHARVGEEYQ ELQLDGFDNE SSNKTWMKNT  60
   61 GKTVAILLKD DYFVSGAGLP GRFKAEKVEF HWGHSNGSAG SEHSINGRRF PVEMQIFFYN 120
  121 PDDFDSFQTA ISENRIIGAM AIFFQVSPRD NSALDPIIHG LKGVVHHEKE TFLDPFVLRD 180
  181 LLPASLGSYY RYTGSLTTPP CSEIVEWIVF RKPVPISYHQ LEAFYSIFTT EQQDHVKSVE 240
  241 YLRNNFRPQQ GLNDRVVSKS AVRDAWNHDM TDFLENPLGT EASKVCSSPP IHMKVQPLNQ 300
  301 TALQVSWSRP ETIYHPPIMN YMISYSWTKN EDEKEKTFTK DSDKDLKATI SHVSPDSLYL 360
  361 FRVQAVCQND MRSDFSQTML FQANTTRIFQ GTRIVKTGVP TASPASSADM APISSGSSTW 420
  421 TSSGIPFSFV SMATGMGPSS SGSQATVASV VTSTLLAGLG FSGGGIPSFP STVWPTRLPT 480
  481 AAPASKQAVR PVLATTEAVA SPGPDGDSAP TRDGEGAEEG EKDEKSESED GEREHEDEGE 540
  541 KDSEKKKSGA PHAAQEPRQD AASPTPSAPS GTAEAGGPQT LPGRGQELPG VPTGRPADDV 600
  601 RDARPGPASG SVPSTQVPPT ATDERFEGGD PRRPQMPSKR PVSRGDRFSE DSKFITVNPA 660
  661 EKNTSGMISR PSPGRMEWII PLIVVSALTF VCLILLIAVL VYWRGCNKIK SKGFPRRFRE 720
  721 VPSSGERGEK GSRKCFQTAH FYVEDSSSPR VVPNESIPII PIPDDMEAIP VKQFVKHIGE 780
  781 LYSNNQHGFS EDFEEVQRCT ADMNITAEHS NHPDNKHKNR YINILAYDHS RVKLRPLPGK 840
  841 DSKHSDYINA NYVDGYNKAK AYIATQGPLK STFEDFWRMI WEQNTGIIIM ITNLVEKGRR 900
  901 KCDQYWPTEN SEEYGNIIVT LKSTKVHACY TVRRFSVRNA KVKKGQKGNP KGRQNERVVI 960
  961 QYHYTQWPDM GVPEYALPVL TFVRRSSAAR TPEMGPVLVH CSAGVGRTGT YIVIDSMLQQ1020
 1021 IKDKSTVNVL GFLKHIRTQR NYLVQTEEQY IFIHDALLEA ILGKETEVSS NQLHSYVNSI1080
 1081 LIPGVGGKTR LEKQFKLVTQ CNAKYVECFS AQKECNKEKN RNSSVVPSER ARVGLAPLPG1140
 1141 MKGTDYINAS YIMGYYRSNE FIITQHPLPH TTKDFWRMIW DHNAQIIVML PDNQSLAEDE1200
 1201 FVYWPSREES MNCEAFTVTL ISKDRLCLSN EEQIIIHDFI LEATQDDYVL EVRHFQCPKW1260
 1261 PNPDAPISST FELINVIKEE ALTRDGPTIV HDEYGAVSAG MLCALTTLSQ QLENENAVDV1320
 1321 FQVAKMINLM RPGVFTDIEQ YQFVYKAMLS LVSTKENGNG PMTVDKNGAV LIADESDPAE1380
 1381 SMESLV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle