YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73985024
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVGEAPPQ APPSRVLGSG RLSRASPAPA RQPRSPAVGR SRAGGPRQPP SPPPAPPPGT  60
   61 MLPSQEASKL YHEHYMRNSR AIGVLWAIFT ICFAIINVVV FIQPYWVGDS VSTPKPGYFG 120
  121 LFHYCVGSGL AGRELTCRGS FTDFSTIPSG AFKAAAFFVL LSMVLILGCI TCFALFFFCN 180
  181 TATVYKICAW MQLLAALCLV LGCMIFPDGW DAETIRDMCG TKTGKYSLGD CSVRWAYILA 240
  241 IIGILNALIL SFLAFVLGNR QTDLLQEELK QENKDFVGST VSSVLRPGGD VSGWGVLPCP 300
  301 VAHSQGP

Type	Start	End	Confidence
Cytoplasmic	1	81	0.99
Transmembrane Helix	82	103	0.93
Non-Cytoplasmic	104	153	0.73
Transmembrane Helix	154	179	0.90
Cytoplasmic	180	186	0.61
Transmembrane Helix	187	208	0.90
Non-Cytoplasmic	209	234	0.66
Transmembrane Helix	235	257	0.93
Cytoplasmic	258	307	0.67