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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73984790
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKMSSFLH IGDICSLYAE GSTNGFISTL GLVDDRCVVQ PEAGDLNNPP KKFRDCLFKL  60
   61 CPMNRYSAQK QFWKAAKPGA NSTTDAVLLN KLHHAADLEK KQNETENRKL LGTVIQYGNV 120
  121 IQLLHLKSNK YLTVNKRLPA LLEKNAMRVT LDEAGNEGSW FYIQPFYKLR SIGDSVVIGD 180
  181 KVVLNPVNAG QPLHASSHQL VDNPGCNEVN SVNCNTSWKI VLFMKWSDNK DDILKGGDVV 240
  241 RLFHAEQEKF LTCDEHRKKQ HVFLRTTGRQ SATSATSSKA LWEVEVVQHD PCRGGAGYWN 300
  301 SLFRFKHLAT GHYLAAEVDP DQDASRSRLR NAQEKMVYSL VSVPEGNDIS SIFELDPTTL 360
  361 RGGDSLVPRN SYVRLRHLCT NTWVHSTNIP IDKEEEKPVM LKIGTSPVKE DKEAFAIVPV 420
  421 SPAEVRDLDF ANDASKVLGS IAGKLEKGTI TQNERRSVTK LLEDLVYFVT GGTNSGQDVL 480
  481 EVVFSKPNRE RQKLMREQNI LKQIFKLLQA PFTDCGDGPM LRLEELGDQR HAPFRHICRL 540
  541 CYRVLRHSQQ DYRKNQEYIA KQFGFMQKQI GYDVLAEDTI TALLHNNRKL LEKHITAAEI 600
  601 DTFVSLVRKN REPRFLDYLS DLCVSMNKSI PVTQELICKA VLNPTNADIL IETKLVLSRF 660
  661 EFEGVSTGEN ALEAGEDEEE VWLFWRDSNK EIRSKSVREL AQDAKEGQKE DRDVLSYYRY 720
  721 QLNLFARMCL DRQYLAINEI SGQLDVDLIL RCMSDENLPY DLRASFCRLM LHMHVDRDPQ 780
  781 EQVTPVKYAR LWSEIPSEIA IDDYDSSGAS KDEIKERFAQ TMEFVEEYLR DVVCQRFPFS 840
  841 DKEKNKLTFE VVNLARNLIY FGFYNFSDLL RLTKILLAIL DCVHVTTIFP ISKMAKGEEN 900
  901 KGSNVMRSIH GVGELMTQVV LRGGGFLPMT PMAAAPEGNV KQAEPEKEDI MVMDTKLKII 960
  961 EILQFILNVR LDYRISCLLC IFKREFDESN SQTSETSSGN SSQEGPSNVP GTLDFEHIEE1020
 1021 QAEGIFGGRK ENTPLDLDDH GGRTFLRVLL HLTMHDYPPL VSGALQLLFR HFSQRQEVLQ1080
 1081 AFKQVQLLVT SQDVDNYKQI KQDLDQLRSI VEKSELWVYK GQGPDEAMDG ASGENEHKKT1140
 1141 EEGHNKSQKH ESTSSYNYRV VKEILIRLSK LCVQESASVR KSRKQQQRLL RNMGAHAVVL1200
 1201 ELLQIPYEKA EDTKMQEIMR LAHEFLQNFC AGNQQNQALL HKHINLFLNP GILEAVTMQH1260
 1261 IFMNNFQLCS EINERVVQHF VHCIETHGRN VQYIKFLQTI VKAEGKFIKK CQDMVMAELV1320
 1321 NSGEDVLVFY NDRASFQTLI QMMRSERDRM DENSPLMYHI HLVELLAVCT EGKNVYTEIK1380
 1381 CNSLLPLDDI VRVVTHEDCI PEVKIAYINF LNHCYVDTEV EMKEIYTSNH MWKLFENFLV1440
 1441 DICRACNNTS DRKHADSILE KYVTEIVMSI VTTFFSSPFS DQSTTLQTRQ PVFVQLLQGV1500
 1501 FRVYHCNWLM PSQKASVESC IRVLSDVAKS RAIAIPVDLD SQVNNLFLKS HNIVQKTAMN1560
 1561 WRLTARNAAR RDSVLAASRD YRNIIERLQD IVSALEDRLR PLVQAELSVL VDVLHRPELL1620
 1621 FPENTDARRK CESGGFICKL IKHTKQLLEE NEEKLCIKVL QTLREMMTKD RGYGEKGEAL1680
 1681 RQILVNRYYG NIRPSGRRES LTSFGNGPLS PGGPSKPGGG GGGSGSSSTS RGEMSLAEVQ1740
 1741 CHLDKEGASN LVIDLIMNAS SDRVFHESIL LAIALLEGGN TTIQHSFFCR LTEDKKSEKF1800
 1801 FKVFYDRMKV AQQEIKATVT VNTSDLGNKK KDDETDRDAP SRKKAKEPST QITEEARDQL1860
 1861 LEASAATRKA FSTFRREADP DDHYQSGEGA QATADKTKDE LEMSAVITIM QPILRFLQLL1920
 1921 CENHNRDLQN FLRCQNNKTN YNLVCETLQF LDCICGSTTG GLGLLGLYIN EKNVALINQT1980
 1981 LESLTEYCQG PCHENQNCIA THESNGIDII TALILNDINP LGKKRMDLVL ELKNNASKLL2040
 2041 LAIMESRHDS ENAERILYNM RPKELVEVIK KAYMQGEVEF EDGENGEDGA ASPRNVGHNI2100
 2101 YILAHQLARH NKELQTMLKP GGQVDGDEAL EFYAKHTAQI EIVRLDRTME QIVFPVPSIC2160
 2161 EFLTKESKLR IYYTTERDEQ GSKINDFFLR SEDLFNEMNW QKKLRAQPVL YWCARNMSFW2220
 2221 SSISFNLAVL MNLLVAFFYP FKGVRGGTLE PHWSGLLWTA MLISLAIVIA LPKPHGIRAL2280
 2281 IASTILRLIF SVGLQPTLFL LGAFNVCNKI IFLMSFVGNC GTFTRGYRAM VLDVEFLYHL2340
 2341 LYLLICAMGL FVHEFFYSLL LFDLVYREET LLNVIKSVTR NGRSIILTAV LALILVYLFS2400
 2401 IVGYLFFKDD FILEVDRLPN ETALPEAGES LASQFLYSDV CRVETGENCS SPAPKEELVL2460
 2461 AEETEQDKEH TCETLLMCIV TVLSHGLRSG GGVGDVLRKP SKEEPLFAAR VIYDLLFFFM2520
 2521 VIIIVLNLIF GVIIDTFADL RSEKQKKEEI LKTTCFICGL ERDKFDNKTV TFEEHIKEEH2580
 2581 NMWHYLCFIV LVKVKDSTEY TGPESYVAEM IKERNLDWFP RMRAMSLVSS DSEGEQNELR2640
 2641 NLQEKLESTM KLVTNLSGQL SELKDQMTEQ RKQKQRIGLL GHPPHMNVNP QQPA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle