YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73984198
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	151	0.98
Transmembrane Helix	152	170	0.91
Non-Cytoplasmic	171	185	0.77
Transmembrane Helix	186	207	0.89
Cytoplasmic	208	321	0.99
Transmembrane Helix	322	342	0.86
Non-Cytoplasmic	343	350	0.82
Transmembrane Helix	351	372	0.94
Cytoplasmic	373	379	0.90
Transmembrane Helix	380	402	0.89
Non-Cytoplasmic	403	411	0.84
Transmembrane Helix	412	431	0.95
Cytoplasmic	432	442	0.93
Transmembrane Helix	443	465	0.89
Non-Cytoplasmic	466	478	0.81
Transmembrane Helix	479	495	0.60
Cytoplasmic	496	496	0.23
Transmembrane Helix	497	525	0.78
Non-Cytoplasmic	526	535	0.47
Transmembrane Helix	536	561	0.84
Cytoplasmic	562	599	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPNKNSSGP PRPSLPARPF PLARSPPCRA EWGRVRPQPR PEGHRGFRGR ASGAAPCQVP  60
   61 RRLCEAEAAA VALGGGGAGP RPLMVPPRRH RGAGGPGALG SSPPLGRRSA KVSGAALEDL 120
  121 REAFKVRLQM VCVFIMNRMN SQSSGFTQRR RMALGIVILL LVDVIWVASS ELTSYVFTQY 180
  181 NKPFFSTFAK TSMFVLYLLG FIIWKPWRQQ CTRGFRGKHA AFFADAEGYF AACTTDTTMN 240
  241 SSLSEPLYVP VKFHDIPSEK PENTNIDAEK TPKKSRVRFS NIMEIRQLPS SHALEAKLSR 300
  301 MSYPTVKEQE SLLKTVGKLT TTQVAKISFF FCFVWFLANL SYQEALSDTQ VAIVNILSST 360
  361 SGLFTLILAA VFPSNSGDRF TLSKLLAVIL SIGGVVLVNL SGSEKSAGRD TIGSIWSLVG 420
  421 AMLYAVYIVM IKRKVDREDK LDIPMFFGFV GLFNLLLLWP GFFLLHYTGF EDFEFPNKVV 480
  481 LMCIIINGLI GTVLSEFLWL WGCFLTSSLI GTLALSLTIP LSIIADMCMQ KVQFSWLFFA 540
  541 GAIPVFFSFF IATLLCHYNN WDPVMVGIRR IFAFICRKHR IQSLIMEHYA AKRQSLAFL