YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57100393
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLCKCPKRK VTNLFCFEHR VNVCEHCLVA NHAKCIVQSY LQWLQDSDYN PNCRLCSTPL  60
   61 ANRETTRLVC YDLFHWACLN ERAAQLPRNT APAGYQCPIC SGPIFPPTNL AGPVASTLRE 120
  121 KLAMVNWARA GLGLPLIDEV VSPEPEPLNT SDFSDWSSFN ANGSPEQEEV ASASAAPSFY 180
  181 SQAPRPPASP SRPEQHTVIH MGNPEPLTHA SAPRKVYDTR DDDRSPGLHG DCDEDKYRRR 240
  241 PALGWLAQLL RSRAGSRKRP LTLLQRAGLL LLLGLLGFLA LLALMSRLGR AAADSDPNLD 300
  301 PLMNPHIRVG PS

Type	Start	End	Confidence
Cytoplasmic	1	262	0.57
Transmembrane Helix	263	285	0.87
Non-Cytoplasmic	286	312	0.55