YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73983533
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSHLEGAAL DPLASRAEGP TPASVGIQGM LAGGVILGVA LWLRHDPQTT NLLYLELGDR  60
   61 PAPNTFYVGI YILIAVGAVM MFVGFLGCYG AIQESQCLLG TFFTCLVILF ACEVAAGIWG 120
  121 FVNKDQIAKD VKQFYDQALQ QAVVDDEANN AKAVVKTFHE TLNCCGSSTL SALTTSMLKN 180
  181 SLCPSGSNVI SNLFKEDCHQ KIDDLFSGKL YLIGIAAIVV AVIMIFEMIL SMVLCCGIRN 240
  241 SSVY

Type	Start	End	Confidence
Cytoplasmic	1	20	0.85
Transmembrane Helix	21	43	0.90
Non-Cytoplasmic	44	66	0.81
Transmembrane Helix	67	89	0.92
Cytoplasmic	90	97	0.70
Transmembrane Helix	98	119	0.93
Non-Cytoplasmic	120	211	0.84
Transmembrane Helix	212	236	0.88
Cytoplasmic	237	244	0.76