YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73982346
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAATCGTS AGNKGCTAAA AAAAGGKNNV TSFQRKGPRA SVPDSGCARL VSIAGTRPSV  60
   61 RNGQLLVSTG LPALDQLLGG GLAVGTVLLI EEDKYNIYSS LLFKYFLAEG VINGHTLLVA 120
  121 SAKEDPADIL QELPAPLLDD NCKKDFDEDV GNHKTPESNI KMKIAWRYQL LPKMEPGPVS 180
  181 SRFGHYYDLS KRMPQELIET SKWHGFFFPE KLSPTLNIEP CSLTHGYIKL LQFIQNVIYE 240
  241 EGFDGSNPQK KQKNILRIGI QNLGSPLWGD DICCTENCDN SHSLTKFLYV LRGLLRTSLS 300
  301 ACIITMPTHL IQNKAIIARV TNLSDTVVGL ESFIGSERET NPLYKDYHGL IHIRQIPRLN 360
  361 NLIYDVSDVK DLAFKLKRKL FTIERLHLPP DLSDTVSRSS KQIPAASSRL LGQECGVMAG 420
  421 GRKHLDF

Type	Start	End	Confidence
Signal Peptide	1	20	0.77
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	427	0.99