YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57098899
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWSFLGNI LEEVNEHSTV IGRVWLTVLF IFRILILGTA AEFVWGDEQS DFVCNTQQPG  60
   61 CENVCYDEAF PISHIRLWVL QIIFVSTPSL VYVGHAVHHV RMEEKRKERE AEELCQQAAG 120
  121 DGGDRVPLAT DQGSIKKGGN SSKGAKKFRL EGTLLRTYIC HIIFKTLFEV GFIVGHYFLY 180
  181 GFRILPLYRC SRWPCPNVVD CFVSRPTEKT IFILFMLSVA SVSLFLNILE MSHLGLKRIR 240
  241 SAFKRPVEQP LGEIPEKSLH SIAVSSIQKA KGYQLLEEEK IVSHYFPLTE VGMVETSPLS 300
  301 AKPFSQFEEK MGTGPLGDLS RAYQETLPSY AQVGAQEGEG EEQPVEEGAE PEVGDKRQEA 360
  361 ETVSTEGQET MAVLEGEKAE TPEVGKEGEK EELQAEVSKQ GLPAEKSPSL CPDLTRDDTR 420
  421 PLSRLSKASS RARSDDLTV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.91
Non-Cytoplasmic	42	76	0.94
Transmembrane Helix	77	99	0.90
Cytoplasmic	100	156	0.97
Transmembrane Helix	157	179	0.85
Non-Cytoplasmic	180	210	0.92
Transmembrane Helix	211	231	0.92
Cytoplasmic	232	439	0.94