YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73980799
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHQEPYSVQ ATAAIAAVIT FLILFTIFGN ALVILAVLTS RSLRAPQNLF LVSLAAADIL  60
   61 VATLIIPFSL ANELLGYWYF RRTWCEVYLA LDVLFCTSSI VHLCAISLDR YWAVSRALEY 120
  121 NSKRTPRRIK CIILTVWLIA AVISLPPLIY KGDQGPQPRG RPQCKLNQEA WYILASSIGS 180
  181 FFAPCLIMIL VYLRIYLIAK RSHRRGPRAA GGRGEGESKQ PHSVPTAAST KLPTLASLAA 240
  241 SGEANGHSKP TGEKEEGDTS EDPGTPALPP SWSAVPNPGQ SQKEGVCGAS PEEEAEMEEG 300
  301 EEECEPQALP ASPAAACSPP LRQPQGSRVL ATLRGQVLLG RGVGTTSGQW WRRRAQLTRE 360
  361 KRFTFVLAVV IGVFVLCWFP FFFSYSLGAI CPQHCKVPHG LFQFFFWIGY CNSSLNPVIY 420
  421 TIFNQDFRRA FRRILCRQWT QTAW

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.93
Transmembrane Helix	13	38	0.89
Cytoplasmic	39	48	0.88
Transmembrane Helix	49	71	0.92
Non-Cytoplasmic	72	87	0.93
Transmembrane Helix	88	108	0.93
Cytoplasmic	109	128	0.88
Transmembrane Helix	129	150	0.91
Non-Cytoplasmic	151	174	0.91
Transmembrane Helix	175	198	0.88
Cytoplasmic	199	362	0.99
Transmembrane Helix	363	383	0.96
Non-Cytoplasmic	384	403	0.88
Transmembrane Helix	404	424	0.93
Cytoplasmic	425	444	0.97