YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84578883, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.62
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.62
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	35	0.79
Transmembrane Helix	36	57	0.87
Cytoplasmic	58	106	0.92
Transmembrane Helix	107	129	0.82
Non-Cytoplasmic	130	153	0.91
Transmembrane Helix	154	173	0.92
Cytoplasmic	174	236	0.74
Transmembrane Helix	237	257	0.89
Non-Cytoplasmic	258	264	0.59
Transmembrane Helix	265	285	0.85
Cytoplasmic	286	299	0.55
Transmembrane Helix	300	324	0.79
Non-Cytoplasmic	325	336	0.61
Transmembrane Helix	337	357	0.92
Cytoplasmic	358	363	0.47
Transmembrane Helix	364	385	0.64
Non-Cytoplasmic	386	389	0.52
Transmembrane Helix	390	411	0.90
Cytoplasmic	412	431	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDARWWAVVV LATLPSLGAG GESPEAPPQS WTQLWLFRFL LNVAGYASFM VPGYLLVQYL  60
   61 RRKNYLETGR GLCFPLVKAC VFGNEPKAPD EVPLAPRTET AESTPSWQVL KLVFCAAGLQ 120
  121 VSYLTWGVLQ ERVMTGSYGA TATSPGEHFT DSQFLVLMNR VLALVVAGLY CILRKQPRHG 180
  181 APMYRYSFAS LSNVLSSWCQ YEALKFVSFP TQVLAKASKV IPVMMMGKLV SRRSYEHWEY 240
  241 LTAGLISIGV SMFLLSSGPE PRSSPATTLS GLVLLAGYIA FDSFTSNWQD ALFAYKMSSV 300
  301 QMMFGVNLFS CLFTVGSLLE QGALLEGARF MGRHSEFALH ALLLSVCSAF GQLFIFYTIG 360
  361 QFGAAVFTII MTLRQAIAIL LSCLLYGHTV TVVGGLGVAV VFTALLLRVY ARGRKQRGKK 420
  421 AVPTEPAVQK V