YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73978243
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	206	0.82
Transmembrane Helix	207	231	0.87
Cytoplasmic	232	248	0.82
Transmembrane Helix	249	270	0.87
Non-Cytoplasmic	271	279	0.77
Transmembrane Helix	280	304	0.86
Cytoplasmic	305	324	0.86
Transmembrane Helix	325	347	0.89
Non-Cytoplasmic	348	357	0.78
Transmembrane Helix	358	378	0.91
Cytoplasmic	379	385	0.74
Transmembrane Helix	386	410	0.83
Non-Cytoplasmic	411	435	0.92
Transmembrane Helix	436	455	0.97
Cytoplasmic	456	475	0.94
Transmembrane Helix	476	498	0.96
Non-Cytoplasmic	499	534	0.94
Transmembrane Helix	535	558	0.85
Cytoplasmic	559	578	0.88
Transmembrane Helix	579	599	0.95
Non-Cytoplasmic	600	607	0.66
Transmembrane Helix	608	630	0.90
Cytoplasmic	631	636	0.76
Transmembrane Helix	637	659	0.88
Non-Cytoplasmic	660	715	0.97
Transmembrane Helix	716	738	0.92
Cytoplasmic	739	806	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEAEDRKAA AKSDKVKVTG DLDRYSPVLK KGRKTRVDCG GNRVRKCSAT GGPALPADPT  60
   61 PDATGGSSPR RCPRRSASRQ PSPSRTCPAE VPDGGARLLR GAQRPLAAPS RVLTSAGPVR 120
  121 VGHLPAASDP RRPARRPGNK KGARGRSGSD TCRPPPIPAA PPAAPGIRRE RGAGRGPTPA 180
  181 GRLRSPPPRP PRREASMGAA RGIGSFAVWD YVVFAAMLLI SAAIGIYYAF AGGGQQTSKD 240
  241 FLMGGRRMTA VPVALSLTAS FMSAVTVLGT PSEVYRFGAI FSIFAITYFF VVAISAEVFL 300
  301 PVFYKLGITS TYEYLELRFN KCVRLCGTVL FIVQTILYTG IVIYAPALAL NQVTGFDLWG 360
  361 AVVATGVVCT FYCTLGGLKA VIWTDVFQVG IMVAGFASVI IQATVIQGGI STILNDSYNG 420
  421 GRLNFWNFDP NPLQRHTFWT IIIGGTFTWT SIYGVNQSQV QRYISCKSRF QAKMSLYINL 480
  481 LGLWAILICS VLCGLALYSR YHDCDPWTSN KVSAPDQLMP YLVLDILQDF PGLPGLFVAC 540
  541 AYSGTLSTVS SSINALAAVT VEDLIKPHFR SLSERSLSWI SQGMSVLFGV LCIGMAALAS 600
  601 LMGALLQAAL SIFGMVGGPL LGLFALGILV PFANSIGALA GLMAGFAISL WVGIGAQLYP 660
  661 PLPERTMPLS LETYGCNNTY NATNWVTTTE MPFTSAFQVH NAERTPLMDN WYSLSYLYFS 720
  721 TVGTLVTMFM GMLISLPTGG RKQNLDRRFL LTKEDFLSNF DIFKKKKHIL SYKSHPVEDG 780
  781 GTDNPAFNHI ELNYTDQSDK ISGTHL