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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73977253
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAPAPRKT MVPLVPALVM LGLVAGAHGD SKPAFIKVPE DQTGLSGGVA SFVCQATGEP  60
   61 KPRITWMKKG KKVSSQRFEV IEFDDGAGSV LRIQPLRVQR DEAIYECTAT NSLGEINTSA 120
  121 KLSVLEEEQL PPGFPSIDMG PQLKVVEKAR TATMLCAAGG NPDPEISWFK DFLPVDPATS 180
  181 NGRIKQLRSG ALQIESSEES DQGKYECVAT NSAGTRYSAP ANLYVRVRRV APRFSIPPSS 240
  241 QEVMPGGSVN LTCVAVGAPM PYVKWMMGAE ELTKEDEMPV GRNVLELSNV VRSANYTCVA 300
  301 ISSLGMIEAT AQVTVKALPK PPIDLLVTET TATSVTLTWD SGNSEPVSYY GIQYRAAGTE 360
  361 GPFQEVDGVA TTRYSIGGLS PFSEYAFRVL AVNSIGRGPP SEAVRARTGE QAPSSPPRRV 420
  421 QARMLSASTM LVQWEPPEEP NGLVRGYRVY YTPDARRPLS AWHKHNTDAG LLTTVGSLLP 480
  481 GITYSLRVLA FTAVGDGPPS PTIQVKTQQG VPAQPADFQA EAESDTRIQL SWLLPPQERI 540
  541 IKYELVYWAA EDEGQQHKVT FDPTSSYTLE DLKPDTLYHF QLAARSEMGV GVFTPTVEAR 600
  601 TAQSTPSAPP QKVTCVSTGS TTVRVSWVPP PAASRNGVIT QYSVAYEAVD GEDRGRHVVE 660
  661 SISREHSSWD LVGLEKWTEY RVWVRAHTDV GPGPESSPVL VRTDEDVPSG PPRKVEVEPL 720
  721 NSTAVRVSWK LPVPSKQHGQ IRGYQVTYVR LENGEPRGPP IIQDVMLAEA QWRPEESEDY 780
  781 ETIISGLTPE TTYSITVAAY TTKGDGARSK PKVVTTTGAV PGRPTMMVST TAMNTALLQW 840
  841 HPPKELPGEL LGYRLQYHRA DEAKPNILDF GKDDQHFTVT GLHKGATYIF RLAAKNRAGP 900
  901 GEEFEKEITT PEDAPSGFPQ NLRVIGLTTS TTELTWDPPV LAERNGRITN YSVVYRDINS 960
  961 QQELQNVTAD THLMLSGLKP DTTYDIKVRA RTSKGAGPLS PSIQSRTMPM EQVFAKNFRV1020
 1021 AAAMKTSVLL SWEVPDSYKS AVPFKILYNG QSVEVDGHSM RKLIADLQPN TEYSFVLMNR1080
 1081 GSSAGGLQHL VSIRTAPDLL PHKPMPASAF IEDGRFTLSM PHVQDASLIR WFYIVVVPID1140
 1141 RVGGSVLAPR WSTPEELELD ELLEAIEQGG GERRRRRQAE RLKPYVAAQV DVLPESFTLG1200
 1201 DKKSYRGFYN RPLSPDLSYQ CFVLASLKEP VDQKRYASSP YSDEIVVQVT PAQQQEEPEM1260
 1261 LWVTGPVLAV ILIILIVIAI LLFKRKRTHS PSSKDEQSIG LKDSLLAHSS DPVEMRRLNY1320
 1321 QTPGMRDHPP IPITDLADNI ERLKANDGLK FSQEYESIDP GQQFTWENSN LEVNKPKNRY1380
 1381 ANVIAYDHSR VILTSVDGVP GSDYINANYI DGYRKQNAYI ATQGPLPETM GDFWRMVWEQ1440
 1441 RTATVVMMTR LEEKSRVKCD QYWPARGTET HGLIQVTLLD TVELATYTVR TFALHKSGSS1500
 1501 EKRELRQFQF MAWPDHGVPE YPTPILAFLR RVKACNPLDA GPMVVHCSAG VGRTGCFIVI1560
 1561 DAMLERMKHE KTVDIYGHVT CMRSQRNYMV QTEDQYVFIH EALLEAATCG HTEVPARSLY1620
 1621 AHIQKLGQVP PGESVTAMEL EFKLLASSKA HTSRFISANL PCNKFKNRLV NIMPYELTRV1680
 1681 CLQPIRGVEG SDYINASFLD GYRQQKAYIA TQGPLAESTE DFWRMLWEHG STIVVMLTRL1740
 1741 REMGREKCHQ YWPAERSARY QYFVVDPMAE YNMPQYILRE FKVTDARDGQ SRTIRQFQFT1800
 1801 DWPEQGVPKT GEGFIDFIGQ VHKTKEQFGQ DGPITVHCSA GVGRTGVFIT LSIVLERMRY1860
 1861 EGVVDMFQTV KTLRTQRPAM VQTEDQYQLC YRAALEYLGS FDHYAT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle