YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73976701
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHIHGARVA AKPGSVPGTA GQEGPVGVQP RQGAHSREER ARTSPEPAAA ELLLLSLRPT  60
   61 QQLPSPGHDP SAPRDPGPAL SPGTSSPLPW AMANSGLQLL GYFLALGGWV GIIASTALPQ 120
  121 WKQSSYAGDA IITAVGLYEG LWMSCASQST GQVQCKLYDS LLALEGHIQS ARALMVVAVL 180
  181 LGFVAMVLSV VGMKCTRVGD SNPTAKGRIA ISGGVLFLLA GLCTLTAVSW YATLVTQEFF 240
  241 NPSTPVNARY EFGSALFVGW ASAGLAMLGG SFLCCTCPEP ERAASSPQPY RPGPSAAARE 300
  301 YV

Type	Start	End	Confidence
Cytoplasmic	1	98	0.87
Transmembrane Helix	99	118	0.93
Non-Cytoplasmic	119	170	0.91
Transmembrane Helix	171	193	0.91
Cytoplasmic	194	208	0.93
Transmembrane Helix	209	234	0.86
Non-Cytoplasmic	235	254	0.92
Transmembrane Helix	255	276	0.92
Cytoplasmic	277	302	0.96