YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84468390
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKQLAPLVL FSLTLLISLI HSTTAGAATS GSHNITRILA KHPGFSTFNH YLTITHLADE  60
   61 INRRQTITIL AIDNAAMSSL LDKHLSVSTL KNVLSLHVLV DYFGAKKLHQ ITNGTTLVSS 120
  121 MFQATGSAAG TAGYVNVTNL KGGKVGFAAE DNDGLHSFYV KSIEELPYVI SVLEISQPLS 180
  181 SADAEAPTAA PSDIDLIAIM SKQGCKAFAD LLRVSKALPT FKETVDGGLT VFCPTDSAVN 240
  241 GFSAKYKNLT DSKKVSLLLY HGVPVYQSLQ MLKSNNGIMN TLATEGANKY DFTVQNDGED 300
  301 VNLETKVNTA NIIGTLIDQD PFVVYKINKV LMPRELFKGV KEDLAPAESP KPAKKKKTTK 360
  361 KGKAPAADED ADSPADGPDA DADSDDEKAA DDNGVSGLNQ GFRFVMVFFS LFIGFLVL

Type	Start	End	Confidence
Signal Peptide	1	27	0.98
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	418	0.99