YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73975293
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	34	0.99
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	91	0.99
Transmembrane Helix	92	111	0.90
Cytoplasmic	112	127	0.80
Transmembrane Helix	128	151	0.92
Non-Cytoplasmic	152	157	0.84
Transmembrane Helix	158	176	0.94
Cytoplasmic	177	229	0.99
Transmembrane Helix	230	250	0.92
Non-Cytoplasmic	251	267	0.94
Transmembrane Helix	268	289	0.91
Cytoplasmic	290	299	0.74
Transmembrane Helix	300	319	0.96
Non-Cytoplasmic	320	325	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAARGSG RASAARLPLL LLLALLWAPS GGRAAPDGDL SHRNKEPPAP AQQLQPQPAA  60
   61 AQGPEPARAE KGFTPAAPVH SNKEDPATQT NLGFIHAFVA AISVIIVSEL GDKTFFIAAI 120
  121 MAMRYNRLTV LAGAMLALGL MTCLSVLFGY ATTVIPRVYT YYVSTALFAI FGIRMLREGL 180
  181 KMSPDEGQEE LEEVQAELKK KDEEFQRTKL LNGPGDVETG ASTAIPQKRW LHFISPIFVQ 240
  241 ALTLTFLAEW GDRSQLTTIV LAAREDPYGV AVGGTVGHCL CTGLAVIGGR MIAQKISVRT 300
  301 VTIIGGIVFL AFAFSALFIS PDSGF