YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73975115
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMKWISVLL GLQLSCYFSS GSCGKVLVWP TEYSHWINVK TILDELVQRG HEVTVLTSSA  60
   61 SILVDPNKLS AIKFEIYSAH LSRGDFEALF IKLLNIWIYD MPKDSFWTYF SVMQEIFWEF 120
  121 YECAEKLCKD VVLNKKLMTK LQESKFDLVL ADTIIPCGEL LAELLKIPLV YSLRFSPGYA 180
  181 FEKHSGGLPL PPSYVPVILS ELTDQMTFME RVKNMIYVLY FDFWFQTINE KSWDQFYSEV 240
  241 LGKPTTLYEL MRKADIWLIR TYWDFEYPHP LLPHFDFVGG LHCKPAKSLP TLTFSSQEME 300
  301 EFVQSSGENG IVVFSLGSMV NNMPEERANV IASALAQIPQ KVLWRFDGKK PDTLGPNTRL 360
  361 YKWIPQNDLL GHPKTKAFIT HGGTNGIYEA IYHGIPMVGI PLFADQADNI VHMKAKGAAI 420
  421 RLDFSTMSSA DLLDALRTVI NDPSYKENAM KLSRIHHDQP IKPLDRAVFW IEYVMRHKGA 480
  481 KHLRPASHDL TWFQYHSLDV IGFLLACVAT AIFVTTQCCL FCCRKVAKTG KKIKKE

Type	Start	End	Confidence
Signal Peptide	1	23	0.95
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	499	0.99
Transmembrane Helix	500	523	0.87
Cytoplasmic	524	536	0.91