YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73975113
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMKWISVLL GLQLSCYFSS GSCGKVLVWP TEYSHWINVK TILDELVQRG HEVTVLTSSA  60
   61 SILVDPNKLS AIKFEIYSAH LSRGDFEALF IKLLNIWIYD MPKDSFWTYF SVMQEIFWEF 120
  121 YECAEKLCKD VVLNKKLMTK LQESKFDLVL ADTIIPCGEL LAELLKIPLV YSLRFSPGYA 180
  181 FEKHSGGLPL PPSYVPVILS ELTDQMTFME RVKNMIYVLY FDFWFQTINE KSWDQFYSEV 240
  241 LGRPTTLYEL MRKADIWLIR TYWDFEYPHP LLPHFDFVGG LHCKPAKSLP TEMEEFVQSS 300
  301 GENGIVVFSL GSMVNNMPEE RANVIASALA QIPQKVLWRF DGKKPDTLGP NTRLYKWIPQ 360
  361 NDLLGHPKTK AFITHGGTNG IYEAIYHGIP MVGIPLFADQ ADNIVHMKAK GAAIRLDFST 420
  421 MSSADLLDAL RTVINDPSYK ENAMKLSRIH HDQPIKPLDR AVFWIEYVMR HKGAKHLRPA 480
  481 SHDLTWFQYH SLDVIGFLLA CVATAIFVTT QCCLFCCRKV AKTGKKIKKE

Type	Start	End	Confidence
Signal Peptide	1	23	0.95
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	493	0.99
Transmembrane Helix	494	517	0.87
Cytoplasmic	518	530	0.91