YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73974924
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEALSTSP RANHQSGDRM EAPAVVSESP GEPSRTPPCS REYAGHHSRT PRYQRLRTGG  60
   61 VPRPQSRPRS RTARGIAVPA GETSRVLKAP DRAPLGGRAL ASEAEHRLFE RLFEDYNEII 120
  121 RPVANVSEPV IIQFEVSMSQ LVKVDEVNQI METNLWLKQI WNDYKLKWNP ADYDGAEFMR 180
  181 VPAQKIWKPD IVLYNNAVGD FQVDDKTKAL LKYTGEVTWI PPAIFKSSCK IDVTYFPFDY 240
  241 QNCTMKFGSW SYDKAKIDLV LIGSSMNLKD YWESGEWAII KAPGYKHDIK YNCCEEIYPD 300
  301 ITYSLYIRRL PLFYTINLII PCLLISFLTV LVFYLPSDCG EKVTLCISVL LSLTVFLLVI 360
  361 TETIPSTSLV IPLIGEYLLF TMIFVTLSIV ITVFVLNVHY RTPTTHTMPT WVKTIFLHLL 420
  421 PRVMFMTRPA GSDGHAQKPR PSYHAELSTL NCFRRAETRG CKEGCACQDG ACSHCRHRRI 480
  481 KISNFSANLP RSSSSESISA ALSLSALSPE IKEAIQSVKY IAENMKAQND AKEIQDDWKY 540
  541 VAMVIDRIFL WVFILVCILG TAGLFLQPLL ARDDA

Type	Start	End	Confidence
Non-Cytoplasmic	1	312	0.88
Transmembrane Helix	313	335	0.94
Cytoplasmic	336	342	0.81
Transmembrane Helix	343	364	0.90
Non-Cytoplasmic	365	376	0.70
Transmembrane Helix	377	398	0.92
Cytoplasmic	399	547	0.93
Transmembrane Helix	548	570	0.92
Non-Cytoplasmic	571	575	0.89