YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73974854
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRASLAGCRC QAVIPGDHAG GCRNRVVEEG PWLCDQRVVR RTTWAQERSC LALVLAVHGA  60
   61 ENATLTSRQM QNILPGSRTR VAEPGLCLRG SSAPTAPACP LADSAERRAQ ARDSERSQQG 120
  121 GLSGWDPTGE TAQPEAMPHE KSFLVSGDNY PPPNPGYPGG PQPSMPPYPG APYPQPPFQP 180
  181 SPYGQPGYPQ GPGSYPQGGY PQGPYPQDPY PQGPYPQGGY PQGPYPQSPF PPNPYGQPQA 240
  241 FPTQDPGSPQ HGNYHEEGPP SYYDNQDFPA INWDDKSIRQ AFIRKVFLVL TLQLSVTLST 300
  301 VAVFTFVGEV KGFVRENVWT YYVSYAVFFI SLIVLSCCGD FRRKHPWNLV ALSILTVSLS 360
  361 YMVGMIASFY NTEAVIMAVG ITTTVCFTVV IFSMQTRYDF TSCMGVLLVS MVVLVIFAIL 420
  421 CIFIRNRILE IVYASLGALL FTCFLAVDTQ LLLGNKQLSL SPEEYVFAAL NLYTDIINIF 480
  481 LYILTIIGRA KE

Type	Start	End	Confidence
Cytoplasmic	1	285	0.93
Transmembrane Helix	286	308	0.92
Non-Cytoplasmic	309	317	0.88
Transmembrane Helix	318	339	0.91
Cytoplasmic	340	346	0.80
Transmembrane Helix	347	368	0.89
Non-Cytoplasmic	369	373	0.72
Transmembrane Helix	374	394	0.79
Cytoplasmic	395	402	0.61
Transmembrane Helix	403	424	0.94
Non-Cytoplasmic	425	430	0.63
Transmembrane Helix	431	453	0.86
Cytoplasmic	454	464	0.66
Transmembrane Helix	465	488	0.70
Non-Cytoplasmic	489	492	0.48