YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73974345
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGIRKGESR AKESKPREPG TRRCAKCGRL DFILMKKMGI KSGFTFWNLV FFLTVSCVKG  60
   61 FIYTCGGTLK GLNGTIESPG FPYGYPNGAN CTWVIIAEER NRIQIVFQSF ALEEEYDYLS 120
  121 LYDGHPHPTN FRTRLTGFHL PPPVTSTKSV FSLRLTSDFA VSAHGFKVYY EELQSSSCGN 180
  181 PGVPPKGVLY GTRFDVGDKI RYSCVTGYIL DGHPQLTCIA NSINTASWDF PVPICRAEDA 240
  241 CGGTMRGSSG IISSPSFPNE YHNNADCTWT IVAEPGDTIS LIFTDFQMEE KYDYLEIEGS 300
  301 EPPTIWLSGM NIPPPIISNK NWLRLHFVTD SNHRYRGFSA PYQGSSTLTH TTSTGELEEH 360
  361 NRTATGAFAV ASTSADVTVS SVTAVTIHRL SEEQRVQVTN LRNSGLDPNT SKDGLSPHQA 420
  421 DTQSTRRRPR NAEQIERTKE LAVVTHRVKK AIDFKSRGFK LFPGKDNSNK FSILNEGGIK 480
  481 TASNLCPDPG EPENGKRVGS DFSLGSSVQF SCDEDYVLQG AKSITCQRIA EVFAAWSDHR 540
  541 PVCKVKTCGS NLQGPSGTFT SPNFPFQYDS NAQCVWVITA VNTNKVIQIN FEEFDLEIGY 600
  601 DTLTIGDGGE VGDPRTVLQV LTGSFVPDLI VSMSSQMWLH LQTDESVGSV GFKVNYKEIE 660
  661 KESCGDPGTP LYGIREGDGF SNRDVLRFEC QFGFELIGEK SIVCQENNQW SANIPICIFP 720
  721 CLSNFTAPMG TVLSPDYPEG YGNNLNCIWT IISDPGSRIH LSFNDFDLES QFDFLAVKDG 780
  781 DSPDSPILGT FTGAEVPSHL TSNSHILRLE FQADHSMSGR GFNITYNTFG HNECPDPGIP 840
  841 INARRFGDNF QLGSSISVIC EEGFIKTQGT ETITCILMDG KVMWSGPIPR CGAPCGGHFS 900
  901 APSGLILSPG WPGYYKDSLN CEWVIEAEPG HSIKITFERF QTELNYDVLE VHDGPNLLSP 960
  961 LLGSYNGTQV PQFLFSSSNF IYLLFTTDNS RSNNGFKIHY ESVTVNTYSC LDPGIPVHGR1020
 1021 RYGHDFSIGS TVSFSCDPGY RLSHEEPLLC EKNHWWSHPL PTCDALCGGD VRGPSGTILS1080
 1081 PGYPEFYPNS LNCTWTVDVT HGKGVQFNFH TFHLEDHHDY LLITENGSFT QPLARLTGSE1140
 1141 LPSTINAGLY GNFRAQLRFI SDFSISYEGF NITFSEYNLE PCEDPGIPQY GNRIGFNFGV1200
 1201 GDTLTFSCSS GYRLEGTSEI TCLGGGRRVW SAPLPRCVAE CGASATNNEG ILLSPNYPLN1260
 1261 YENNHECIYS IQVQAGKGIN ISARTFHLAQ GDVLKIYDGK DKTTHLLGAF TGASMRGLTL1320
 1321 SSTSNQLWLE FNSDSEGTDE GFQLVYTSFE LSHCEDPGIP QFGYKISDQG HFAGSTIIYG1380
 1381 CNPGYTLHGS SLLKCMTGER RAWDYPLPSC IAECGGRFKG ESSGRILSPG YPFPYDNNLR1440
 1441 CMWMIEVDPG NIVSLQFLAF DTEASHDILR VWDGPPENEM LLKEISGSLI PEGIHSTLNI1500
 1501 VTIQFDTDFY ISKSGFAIQF SSSVATACRD PGVPMNGTRN GDGREPGDTV VFQCDPGYEL1560
 1561 QGEERITCIQ VENRYFWQPS PPVCIAPCGG NLTGSSGFIL SPNFPHPYPH SRDCDWTIMV1620
 1621 NTDYVISLAF ISFSIEPNYD FLYIYDGPDS NSPLIGSFQD SKLPERIESS SNTMHLAFRS1680
 1681 DGSVSYTGFH LEYKAKLRES CFDPGNIMNG TRLGMDYKLG STVTYYCDAG YVLQGYSTLT1740
 1741 CIMGDDGRPG WNRALPSCHA PCGSRSTGSE GTVLSPNYPK NYSVGHNCVY SIAVPKEFVV1800
 1801 FGQFVFFQTS LHDVVEVYDG PTQQSSLLSS LSGSHSGESL PLSSGNQITI RFTSVGPITA1860
 1861 KGFHFVYQAV PRTSSTQCSS VPEPRFGRRI GNEFAVGSLV LFECNPGYIL HGSIAIRCDT1920
 1921 VPNSLAQWND SLPTCIVPCG GILTKRKGTI LSPGYPEPYD NNLNCVWKIT VPEGAGIQVQ1980
 1981 VVSFATEHNW DSLDFYDGGD NNAPRLGSYS GTTIPHLLNS TSNNLYLNFQ SDISVSAAGF2040
 2041 HLEYTAIGLD SCPEPQTPSS GMKIGDRYMV GDVVSFQCDQ GYSLQGHSHI TCMPGPVRRW2100
 2101 NYPIPICLAQ CGGAMSDFSG VILSPGFPGN YPSSLDCTWT IKLPVGFGVH LQFVNFSTET2160
 2161 IHDYLEVRSG SSETSTVIGR LSGPQIPSSL FSTTHETSLY FHSDYSQNKQ GFHIVYQAYQ2220
 2221 LQSCPDPRPF RNGFVIGNDF TVGQTISFEC FPGYTLIGNS ALTCLHGVSR NWNHPLPRCE2280
 2281 ALCGGNITAM NGTIYSPGYP DEYPNFQDCF WLVRVPPGNG IYINFTVLQT EPIYDFITVW2340
 2341 DGPDQNSPQI GQFSGNTALE SVYSTSNQIL IKFHSDFTTS GFFVLSYHAY QLRVCQPPPP2400
 2401 VPNAEILTED DEFEIGDIIR YQCLPGFTLV GNAILTCRLG ERLQMDGAPP VCQVLCPANE2460
 2461 LRLDSTGVIL SPGYPDSYPN LQMCAWSISV EKGYNISMFV EFFQTEKEFD VLQVYDGPNI2520
 2521 QSPVLISLSG DYSSAFNITS NGHEVFLQWS ADHGNNKKGF RIRYIAFYCS TPESPPHGYI2580
 2581 ISQTGGQLNS VVRWACDRGF RLVGKSSAVC RKSPYGYHAW DAPVPACQAI SCGIPKAPTN2640
 2641 GGILTTDYLV GTRVTYFCND GYRLSSKELT TAICQSDGTW SNHNKTPRCV VVTCPSINSF2700
 2701 TLEHGRWRIV NGSHYEYKTK VVFSCDPGYH GLGPASIECL PNGTWSWRNE RPYCQIISCG2760
 2761 ELPTPPNGNK IGTQTSYGST AIFTCDSGFM LVGSAVRECL SSGLWSGSET RCLAGHCGIP2820
 2821 ELIVNGQVIG ENYGYRDTVV YQCNPGFRLI GSSVRICQQD HNWSGQLPSC VPVSCGHPGS2880
 2881 PIYGRTSGNG FNFNDVVTFS CNIGYVMQGP TKAQCQANRQ WSHPPPVCKV VNCSDPGIPA2940
 2941 NSKRESKIEH GNFTYGTVVF YDCNPGYFLF GSSVLICQPN GQWDKPLPEC IMIDCGHPGV3000
 3001 PPNAVLSGEK YTFGSTVHYS CTGKRTLLGQ SSRTCQLNGH WSGSQPHCSG DATGTCGDPG3060
 3061 TPGHGSRQES DFRTKSSVRF ACDIGYILHG SEERTCLANG SWTGRQPECK AVQCGNPGTT3120
 3121 ANGKVFRIDG TTFSSSVIYS CMEGYILSGP SVRQCTANGT WSGTLPNCTI ISCGDPGIPA3180
 3181 NGLRYGDDYV VGQNVSYMCQ PGYTMEVNGS RIRTCTTNGT WSGIIPTCRA VTCPAPPQIS3240
 3241 NGRLEGTNFD WGFSISYICS PGYELSFPAV LTCVGNGTWS GEVPQCLPKF CGDPGIPAQG3300
 3301 KREGKSFIYQ SEVSFSCNSP FILVGSSTRI CQADGTWSGS SPHCIEPTRT SCENPGVPRH3360
 3361 GSQNNTFGFQ VGSVVQFHCK KGHLLQGSTT RTCLPDLTWS GIQPECIPHS CKQPETPAHA3420
 3421 NVVGMDLPSH GYTLIYTCQP GFFLAGGTEH RVCRSDNTWT GKVPVCEAGS KILVKDPRPA3480
 3481 LGTPSPKLSV PDDVFAQNYI WKGSYNFKGR KQPMTLTVTS FNASTGRVNA TLSNSNMELL3540
 3541 LSGVYKSQEA RLMLHIYLIK APTHASVKKM KEDNWAMDGF VSAEPDGATY VFQGFIQGKD3600
 3601 YGQFGLQRLG LNMSEGSNSS NQPHGTNSSS VAIAILVPFF ALIFAGFGFY LYKQRTAPKT3660
 3661 QYTGCSVHEN NNGQAAFENP MYDTNAKSVE GKAVRFDPNL NTVCTMV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle