YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73973376
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELGSNNDFE RFSPLPYLVQ LQTSAPVVSA EARPLRARRR AGAAVVPARP RPRPAGLAVR  60
   61 DAELRVSGAS PPAAVAQALR SPQAYEEERG EKIARRHVKP RAPTPASARR GPGLRNLQSR 120
  121 KYPAPSSSHR GAPWLPGPRS HVLLGSAGRG RPCSRRAAPP RAAAAPGRRG FKMENFDASL 180
  181 STYFKALLGP RDTRVKGWFL LDNYIPTFIC SVIYLLIVWL GPKYMKNRQP FSCRGILVVY 240
  241 NLGLTLLSLY MFCELVTGVW EGRYNFFCQG TRSAGEADMK IIRVLWWYYF SKLIEFMDTF 300
  301 FFILRKNNHQ ITVLHVYHHA SMLNIWWFVM NWVPCGHSYF GATLNSFIHV LMYSYYGLSS 360
  361 VPSMRPYLWW KKYITQGQLL QFVLTIIQTS CGVIWPCSFP LGWLYFQIGY MISLIALFTN 420
  421 FYIQTYNKKG ASRRKEHLKD HQNGSVAAVN GHTNSFSSLE NNVKPRKQRK D

Type	Start	End	Confidence
Non-Cytoplasmic	1	199	0.68
Transmembrane Helix	200	221	0.85
Cytoplasmic	222	235	0.59
Transmembrane Helix	236	258	0.82
Non-Cytoplasmic	259	284	0.70
Transmembrane Helix	285	304	0.61
Cytoplasmic	305	310	0.68
Transmembrane Helix	311	330	0.62
Non-Cytoplasmic	331	336	0.65
Transmembrane Helix	337	358	0.81
Cytoplasmic	359	377	0.77
Transmembrane Helix	378	398	0.91
Non-Cytoplasmic	399	403	0.79
Transmembrane Helix	404	425	0.90
Cytoplasmic	426	471	0.98