YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73973318
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMNYNAKDE VDGGPPCAPG ATAKNRRPDN TAFKQQRLPA WQPILTAGTV LPTFFIIGLI  60
   61 FIPIGIGIFV TSNNIREIEI DYTGTDPSSP CNKCLSPNVT PCICTINFTL EQSFEGNVFM 120
  121 YYGLSNFYQN HRRYVKSRDD SQLNGDSGAL LNPSKECEPY RRNEDKPIAP CGAIANSMFN 180
  181 DTLELFLVGN ESYPTPIPLK KKGIAWWTDK NVKFRNPPGD QSLEERFKGT TNPVNWVKPV 240
  241 YMLDSEPDNN GFINEDFIVW MRTAALPTFR KLYRLIERKS DLHPTLPAGR YYLNITYNYP 300
  301 VHSFDGRKRM ILSTISWMGG KNPFLGIAYI AIGSISFLLG VVLLVINHKY RNSSNTADIT 360
  361 I

Type	Start	End	Confidence
Cytoplasmic	1	43	0.69
Transmembrane Helix	44	70	0.83
Non-Cytoplasmic	71	324	0.69
Transmembrane Helix	325	346	0.94
Cytoplasmic	347	361	0.66