YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73971745
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRQKELVSR CGEMLHIRYR LLRQALAECL GTLILVMFGC GSVAQVVLSR GTHGGFLTIN  60
   61 LAFGFAVTLG ILVAGQVSGA HLNPAVTFAM CFLAREPWIK LPVYALAQTL GAFLGAGIVF 120
  121 GLYYDAIWDF AKNELVVSGP NGTAGIFATY PSGHLDMVNG FFDQFIGTAS LIVCVLAIVD 180
  181 PYNNPVPRGL EAFTVGLVVL VIGTSMGFNS GYAVNPARDF GPRLFTAIAG WGSEVFTTGR 240
  241 HWWWVPIVSP LLGSIAGVFV YQLMIGCHLE QPPSSTEQEN VKLAHVKHKE QI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	47	0.82
Non-Cytoplasmic	48	58	0.76
Transmembrane Helix	59	80	0.86
Cytoplasmic	81	100	0.77
Transmembrane Helix	101	123	0.89
Non-Cytoplasmic	124	160	0.87
Transmembrane Helix	161	182	0.88
Cytoplasmic	183	191	0.76
Transmembrane Helix	192	213	0.90
Non-Cytoplasmic	214	241	0.81
Transmembrane Helix	242	265	0.87
Cytoplasmic	266	292	0.84