YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73971236
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.47
Transmembrane Helix	8	28	0.56
Non-Cytoplasmic	29	320	0.90
Transmembrane Helix	321	340	0.62
Cytoplasmic	341	450	0.75
Transmembrane Helix	451	472	0.91
Non-Cytoplasmic	473	479	0.64
Transmembrane Helix	480	501	0.93
Cytoplasmic	502	508	0.66
Transmembrane Helix	509	529	0.93
Non-Cytoplasmic	530	536	0.72
Transmembrane Helix	537	558	0.93
Cytoplasmic	559	567	0.69
Transmembrane Helix	568	588	0.89
Non-Cytoplasmic	589	614	0.77
Transmembrane Helix	615	635	0.85
Cytoplasmic	636	665	0.75
Transmembrane Helix	666	687	0.93
Non-Cytoplasmic	688	699	0.74
Transmembrane Helix	700	720	0.93
Cytoplasmic	721	732	0.68
Transmembrane Helix	733	758	0.78
Non-Cytoplasmic	759	825	0.78
Transmembrane Helix	826	848	0.88
Cytoplasmic	849	854	0.71
Transmembrane Helix	855	877	0.89
Non-Cytoplasmic	878	884	0.65
Transmembrane Helix	885	905	0.70
Cytoplasmic	906	911	0.51
Transmembrane Helix	912	934	0.57
Non-Cytoplasmic	935	940	0.66
Transmembrane Helix	941	962	0.89
Cytoplasmic	963	1009	0.84
Transmembrane Helix	1010	1032	0.88
Non-Cytoplasmic	1033	1046	0.74
Transmembrane Helix	1047	1070	0.87
Cytoplasmic	1071	1087	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKISVLLFL AWVSFLFYAG IALFTSGFLL TRLELTNHSS CHEPPGPGSL PWGSQGKPGA  60
   61 CWMASRFSRL VLVLVDALRF DFAQPQPSHG PGEPPVSLPF LGKLNSLQRI LEIQPHHARL 120
  121 YQSKADPPTT TMQRLKALTT GSLPTFIDAG SNFASYAIVE DNLIKQLTNA GRHVVFMGDD 180
  181 TWKDLFPGAF SQAFFFPSFN VRDLHTVDNG ILEHLYPTMD GGEWDVLIAH FLGVDHCGHK 240
  241 YGPHHPEMAK KLSQMDQVIQ GLVERLENDT LLVVIGDHGM TITGDHGGDS DLEISAALFL 300
  301 YSPKALFPRV PPKEPEIVPQ ISLVPTLALL LGLPIPFGNI GEVMAELFAE AEDSQPHSSA 360
  361 LAQASALHLN AQQVSRFLHT YSAAAQNLQV KELHQLQNLF SKASADYQRL LQSPQGAEAA 420
  421 LQTVITELQQ FLRGVRAMCI ESWARFSLGR MAGGAALLAA ACFLCLLVSQ WATYPGFHPL 480
  481 LLTPMACGLA STIVCAGLLA TTGLKLDPVV LGAMAAVGSL LPFLWKAWAG WGSKRPLAAL 540
  541 FPIPGPVLLF LLIRFAAFFS DSFVVAEARA TPFLLGSLIL LLVAQLHWEG KLLPPKLLTI 600
  601 PRLCFSASAG QPRHSGTHAL GLGVGLLLCI RLAGLFHRCP EETPACHSSP WLSPLASMVG 660
  661 GRAKNLWYGA CVGALVALLA AVRLWLCRYS NLKSPEPSVL FVRWGLPLMV LGTAAYWALA 720
  721 SGADEAPPRL RALVAGASVV LPRAVAGLAA SGLMLLLWRP VTVLVKATTG TPRTRTVLTP 780
  781 FSGPPTSQAD LDYVVPQIYR HMQEEFRGRL ERTKSQGPLT VAAYQLGSVY SAAMVTALTL 840
  841 LAFPLLLLHA ERISLVFLLL FLQSFLLLHL LAAGIPITTP GPFTVPWQAV SAWALMATQT 900
  901 FYSLGHQPVF PAIHWHAAFV GFPEGHGSST WLPALLVGAN TFASHLLFAV GCPLLLLWPF 960
  961 LCESQGARKR WQPLGNEAEA RVRPEEEEEP RMEMRLRDAP HHFNAALLQL GLKYLFVLGI1020
 1021 QILACALAAS ILRRHLMVWK VFAPKFIFEA MGFIVSSVGL FLGIALVMRV DGAVSSWFRQ1080
 1081 LILAQQR