YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73971038
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	58	0.89
Non-Cytoplasmic	59	133	0.96
Transmembrane Helix	134	158	0.84
Cytoplasmic	159	173	0.82
Transmembrane Helix	174	198	0.84
Non-Cytoplasmic	199	204	0.74
Transmembrane Helix	205	226	0.93
Cytoplasmic	227	237	0.82
Transmembrane Helix	238	257	0.86
Non-Cytoplasmic	258	260	0.58
Transmembrane Helix	261	284	0.69
Cytoplasmic	285	500	0.74
Transmembrane Helix	501	524	0.88
Non-Cytoplasmic	525	536	0.77
Transmembrane Helix	537	559	0.85
Cytoplasmic	560	570	0.70
Transmembrane Helix	571	593	0.80
Non-Cytoplasmic	594	604	0.69
Transmembrane Helix	605	626	0.92
Cytoplasmic	627	633	0.78
Transmembrane Helix	634	653	0.94
Non-Cytoplasmic	654	664	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLHQSTAIT FLEKWCLDKS LSGCRRHYNV RKKLKLIRIL GLLMGLVAIS TVSFSISAFS  60
   61 EPETQSTEEV IGASGPRAIH GYRQRTLLDL NDKILDYTPQ PPLSQEGKSE NTTDHAQGDY 120
  121 PRDIFSLEER RKGAIILHVI GMIYMFIALA IVCDEFFVPS LTVITEKLGI SDDVAGATFM 180
  181 AAGGSAPELF TSLIGVFIAH SNVGIGTIVG SAVFNILFVI GMCALFSREI LNLTWWPLFR 240
  241 DVSFYIVDLI MLIIFFLDNV IMWWESLLLL TAYFGYVVFM KFNVQVERWV KQMINRNKVV 300
  301 KVTAPEAQAK SSTARDKDEQ ALPAKPRLQR GGSSASLHNS LMRNSIFQLM IHTLDPLAEE 360
  361 LGSYGKLKYY DTMTEEGRFR EKASILHKIA KKKCQVDENE RQNGAANHVE KIELPNSTST 420
  421 EVEMTTPSDA SEPVQNGNLS HTIEAAEAQT TETGEDEEDQ PLSLAWPSNP RKQVTFLIVF 480
  481 PIVFPLWITL PDVRKPSSRK FFPITFFGSI TWIAVFSYLM VWWAHQVGET IGISEEIMGL 540
  541 TILAAGTSIP DLITSVIVAR KGLGDMAVSS SVGSNIFDIT VGLPLPWLLY TIIHRFQPVA 600
  601 VSSNGLFCAI VLLFIMLLFV ILSIALCKWR MNKVLGFIMF GLYFVFLVVS VLLEDRILVC 660
  661 PVSI