YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73970562
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAALAPAAR APATMQCEAD EPKDVLVPGS EEAIVAVALG GKSSAIWQFI LLVISWMHLL  60
   61 FFSPVPAFLQ DLGICTLMVI TTQRLCSTRW VSLFFQIAKV CATQVPFASF GREFTNLKGV 120
  121 VEHMKSSYFT FSYVEVRRVT EEEDEEASRY HAGIVVDRGV PKIPPRRTLW ELGQGLGLSW 180
  181 KGADAEYCFR NTQLARTTVA TDVFNSKNLA VQAQKKILGK MVSKSIATTL IDDTSSEVLD 240
  241 ELYRVTKEYT QNKKEAEKII KNLIKTVIKL AILYRNNQFN QDELALMEKF KKKVHQLAMT 300
  301 VVSFHQVEYT FDRNVLSRLL NECREMLHQI IQRHLTAKSH GRVNNVFDHF SDCDFLAALY 360
  361 NPFGNFKPHL QKLCDGVNKM LDEENI

Type	Start	End	Confidence
Cytoplasmic	1	43	0.70
Transmembrane Helix	44	62	0.69
Non-Cytoplasmic	63	386	0.79