YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73970483
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.66
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGPGSAQRW AAAAGRWGCR LLALLLLLLL PGPGGASEIT FELPDNAKQC FYEDITQGTK  60
   61 CTLEFQVITG GHYDVDCRLE DPDGNVLYKE MKKQYDSFTF TASKNGTYKF CFSNEFSTFT 120
  121 HKTVYFDFQV GEDPPLFPSE NRVSALTQME SACVSIHEAL KSVIDYQTHF RLREAQGRSR 180
  181 AEDLNTRVAY WSVGEALILL VVSIGQVFLL KSFFSDKRTT TTRVGS

Type	Start	End	Confidence
Signal Peptide	1	36	0.99
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	187	0.99
Transmembrane Helix	188	210	0.61
Cytoplasmic	211	226	0.62