YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57092959
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQPPPPPK PWETRRIPGV GPGPGPGPSF QSADLGPTLL TRPGQPTLTR VPPPILPRPS  60
   61 QQTGSSNVNT FRPAYSSFSS GYGAYGNSFY GNYSPYSYGY NGLGYNRLRV DDLPPSRFVQ 120
  121 QAEESSRGAF QSIESIVHAF ASVSMMMDAT FSAVYNSFRA VLDVANHFSR LKIHFTKVFS 180
  181 AFALVRTIRY LYRRLQWMIG LRRGSENEDL WAESEGTVAC LGAEDRAANS AKSWPIFLFF 240
  241 AVILGGPYLI WKLLSTHNDE VTDNTNWASG EDDHVVARAE YDFAAVSEEE ISFRAGDMLN 300
  301 LALKEQQPKV RGWLLASLDG QTTGLIPANY VKILGKRRGR KTVESSKISK QQQSFTNTTL 360
  361 IKGATAADSL DEQEAAFESV FVETNKVPVA PDSTGKGGDK QDL

Type	Start	End	Confidence
Cytoplasmic	1	135	0.78
Transmembrane Helix	136	155	0.65
Non-Cytoplasmic	156	172	0.72
Transmembrane Helix	173	192	0.66
Cytoplasmic	193	232	0.82
Transmembrane Helix	233	251	0.81
Non-Cytoplasmic	252	403	0.85