YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169764443
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQRYQRVN AHDEDEEPQS QSSIPLRGTP NSPPPSFRSR STSPSSRRLL HDDPLNNDAD  60
   61 QTLADAFDDE SDSEADEPDD RQRLMRAQPE SRPVADSSSA TASSSSGMGN EQQQSSDPRS 120
  121 GIQRRQTILP SFSTGSRVIS STNDGVFANL AAKPERGEKT EDLPPSYEEA AADATPPYWE 180
  181 TTILAPGISS DEVYVDGLPV GSVFSFVWNA MISMSFQLVG FLLTYLLHTT HAAKNGSRAG 240
  241 LGLTLVQYGF YMKGGSDTKP DDGTDQYVTP PDPNSHNFDP SSVADGSGSD GGGGGVSGIS 300
  301 TSEWISYVLM IVGWFILIRA ISDFLRARRH EQLVLQSPDR GLPVPIIATN ERTETVV

Type	Start	End	Confidence
Cytoplasmic	1	205	0.73
Transmembrane Helix	206	227	0.80
Non-Cytoplasmic	228	302	0.85
Transmembrane Helix	303	321	0.90
Cytoplasmic	322	357	0.93