YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73970025
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.44
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.44
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	95	0.55
Transmembrane Helix	96	117	0.91
Cytoplasmic	118	128	0.74
Transmembrane Helix	129	148	0.84
Non-Cytoplasmic	149	157	0.81
Transmembrane Helix	158	181	0.91
Cytoplasmic	182	192	0.78
Transmembrane Helix	193	215	0.84
Non-Cytoplasmic	216	223	0.81
Transmembrane Helix	224	246	0.72
Cytoplasmic	247	263	0.68
Transmembrane Helix	264	287	0.90
Non-Cytoplasmic	288	307	0.71
Transmembrane Helix	308	332	0.77
Cytoplasmic	333	349	0.74
Transmembrane Helix	350	372	0.82
Non-Cytoplasmic	373	379	0.62
Transmembrane Helix	380	402	0.87
Cytoplasmic	403	418	0.63
Transmembrane Helix	419	442	0.89
Non-Cytoplasmic	443	447	0.65
Transmembrane Helix	448	472	0.87
Cytoplasmic	473	801	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFQMLVPFS PWNWLLLLVA FKCSEASSDL NESTNSTAQH EPNVRFAAAS SEADEKISVF  60
   61 ALDYDYVQIP YEVTLWILLA SLAKIGFHLY HKLPTIVPES CLLIMVGLLL GGIIFGVDEK 120
  121 SPPAMKTDVF FLYLLPPIVL DAGYFMPTRP FFENIGTIFW YAVVGTLWNS IGIGVSLYGI 180
  181 CQIEAFGLSD ITLLQNLLFG SLISAVDPVA VLAVFENIHV NEQLYILVFG ESLLNDAVTV 240
  241 VLYNLFKSFC QMKTIETIDV FAGIANFFVV GIGGVLIGIF LGFIAAFTTR FTHNIRVIEP 300
  301 LFVFLYSYLS YITAEMFHLS GIMAITACAM TMNKYVEENV SQKSYTTIKY FMKMLSSVSE 360
  361 TLIFIFMGVS TVGKNHEWNW AFVCFTLAFC LIWRALGVFV LTQVINWFRT IPLTFKDQFI 420
  421 IAYGGLRGAI CFALVFLLPA AVFPRKKLFI TAAIVVIFFT VFILGITIRP LVEFLDVKRS 480
  481 NKKQQAVSEE IHCRFFDHVK TGIEDVCGHW GHNFWRDKFK KFDDKYLRKL LIRENQPKSS 540
  541 IVSLYKKLEI KHAIEMAETG MISAVPSFAS LNDCREEKIR KLTPGEMDEI REILSRNLYQ 600
  601 IRQRTLSYNR HNLTTDTSER QAKEILIRRR HSLRESIRKD SSLNHERRAS TSASRYLSLP 660
  661 KNTKLPEKLQ KKKNISNTGG NSSDSDTDVG TTVLNLQPRA RRFLPEQFSK KAPQSCKMEW 720
  721 KNEVDVDLGQ GQPCTPAAPH SKEGGTQTPG MLRQPLLSKG QFGPVQEDSV TEGIRPKPPP 780
  781 RLVRRASEPG NRKARFGSEK P