YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73969600
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGGCGGGW RDRQRRMEEG GGGARSLVPG GPVFLVLCGL LEASGGGRAL PQLSDDIPFR  60
   61 VNWPGTEFSL PTTGVLYKED NYVIMTTTHK EKYKCILPLV TSGDEEEEKD YKGPNPRELL 120
  121 EPLFKQSSCS YRIESYWTYE VCHGKHIRQY HEEKESGQKV NIHEYYLGNM LAKNLLSEKD 180
  181 QEADEKEKSK EIPTKNIEGQ MTPYYPVGMG NGTPCSLKQN RPRSSTVMYI CHPESKHEIL 240
  241 SVAEVTTCEY EVVILTPLLC NHPKYRFRAS PVNDIFCQSL PGSPFKPLTL RQLEQQEEIL 300
  301 RVPFRRNKEE ELQSTKEERF PAIHKPIAVG SQPMLTVGTT HISKLTDDQL IKEFLSGSYC 360
  361 FHGGVGWWKY EFCYGKHVHQ YHEDKDSGKT SVVVGTWNQE EHIAWAKKNP ARAYHLQDDG 420
  421 TQTVRMVSHF YGNGDICDIT DKPRQVTVKL KCKESDSPHA VTVYMLEPHS CQYILGVESP 480
  481 VICKILDTAD ENGLLSLPN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.69
Transmembrane Helix	21	43	0.65
Non-Cytoplasmic	44	499	0.99