YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73969562
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGNGLKPLE WAKLCWADSK DLDAVTTTLP ATAVPFSQCL PGPDSATLSR LTPASISLCL  60
   61 VVRNKDARKQ EGGCGFGATK VPISARFQSS RTSKMAFRCS SKQALAQQVK AICVLIILLY 120
  121 IYATSLFVQI LNDQVFSIVV FGSIVNEGYL NSNSGGETFC IYNRNPSACS YGVTVGVLAF 180
  181 LTCLLYLALD VYFPQISSVK DRKKAVLSDI GVSAFWAFLW FVGFCFLANQ WQVSKPKDNP 240
  241 MNEGTDAARA AITFSFFSIF TWAGQAVLAF QRYQIGADSA LFSQDYMDPS QDSSMPYAPY 300
  301 VEPSAGPDPA GMGGTYQQPA NAFDTEPQGY QSQGY

Type	Start	End	Confidence
Cytoplasmic	1	110	0.97
Transmembrane Helix	111	131	0.88
Non-Cytoplasmic	132	170	0.89
Transmembrane Helix	171	193	0.87
Cytoplasmic	194	205	0.87
Transmembrane Helix	206	228	0.86
Non-Cytoplasmic	229	246	0.85
Transmembrane Helix	247	269	0.84
Cytoplasmic	270	335	0.89