YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73969371
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPRVPGAHP LCKLACQPLA RQCPGLPKPQ AFLLKVPKAT WQCALLAWFV GLNGAEGYMY  60
   61 KDPAWVHDGH VVGSTGSGLG KLTGVSQSER DSNMSRPPEC LLRLLRGAPR QRVCTLFIIS 120
  121 FKFTFFVSIM IYWHIVGEPG GQREFPNLPA DVPCPRLVPP TQLFSALPPG NIFFLETSDR 180
  181 TNPNFLFMCS VESAARAHPE SRVVVLMKGL PGGNASLPRH LGLSLLGCFP NVHMLPLDLE 240
  241 ELFRDTPLAA WYAGRQRRWE PYLLPVLSDA CRIALMWKFG GIYLDTDFIV LKNLHNLTNT 300
  301 LGAQSRYVLN GAFLAFERHH EFMALCMRDF VAHYNGWIWG HQGPQLLTRV FKKWCSIRSL 360
  361 DESHACRGVT TLPCEAFYPI PWQDWKKYFQ DISPEELHRL LNATYAVHVW NKKSQGTRLE 420
  421 ATSRALLAQL HARYCPTTHE AMKMYL

Type	Start	End	Confidence
Cytoplasmic	1	112	0.91
Transmembrane Helix	113	136	0.91
Non-Cytoplasmic	137	446	0.96