YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73968861
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.18
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKRPLGAG RQRRLLGLLV AVAAIHLITC PYAKVEESFN LQAMHDLLYY RLDTDKYDHL  60
   61 EFPGVVPRTF LGPLAVAALS SPVVYVLSLL EAPKFYSQLV VRAVLGLGVI FGLWTLQKEV 120
  121 RRQFGATVAT MFCWVTATQF HLMFYCTRTL PNVLALPVVL PALAAWLQLR WARFIRLSAF 180
  181 AILVFRAELS VFLGLALLLL LGTRRLTVAK ALRCALPAGA LCLGRTAASV CRSLLKSWLY 240
  241 KAGSVLVIGH LAVNAAYSAT ALYVSHFNYP GGVAMHKLHQ LVAPGTDVAL HIDVAAAQTG 300
  301 VSRFLEVNGA WRYDKREDVR PGSGHMLAYT HLLMEAAPAH LALYRDTHRV LASVPGTTGV 360
  361 SLNLSRLPPL DVNLQTRLVL LERRRGPS

Type	Start	End	Confidence
Cytoplasmic	1	14	0.91
Transmembrane Helix	15	35	0.88
Non-Cytoplasmic	36	68	0.95
Transmembrane Helix	69	89	0.81
Cytoplasmic	90	97	0.71
Transmembrane Helix	98	116	0.92
Non-Cytoplasmic	117	123	0.67
Transmembrane Helix	124	145	0.83
Cytoplasmic	146	149	0.64
Transmembrane Helix	150	172	0.82
Non-Cytoplasmic	173	178	0.60
Transmembrane Helix	179	203	0.86
Cytoplasmic	204	241	0.52
Transmembrane Helix	242	264	0.70
Non-Cytoplasmic	265	287	0.58
Transmembrane Helix	288	302	0.18
Cytoplasmic	303	388	0.56