YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169784137
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	225	0.52
Transmembrane Helix	226	240	0.50
Non-Cytoplasmic	241	241	0.04
Transmembrane Helix	242	257	0.91
Cytoplasmic	258	371	0.72
Transmembrane Helix	372	393	0.80
Non-Cytoplasmic	394	394	0.35
Transmembrane Helix	395	415	0.69
Cytoplasmic	416	460	0.77
Transmembrane Helix	461	484	0.86
Non-Cytoplasmic	485	498	0.79
Transmembrane Helix	499	517	0.95
Cytoplasmic	518	528	0.70
Transmembrane Helix	529	550	0.83
Non-Cytoplasmic	551	562	0.80
Transmembrane Helix	563	585	0.91
Cytoplasmic	586	595	0.85
Transmembrane Helix	596	617	0.88
Non-Cytoplasmic	618	664	0.97
Transmembrane Helix	665	685	0.93
Cytoplasmic	686	783	0.98
Transmembrane Helix	784	801	0.90
Non-Cytoplasmic	802	817	0.79
Transmembrane Helix	818	840	0.72
Cytoplasmic	841	852	0.66
Transmembrane Helix	853	873	0.91
Non-Cytoplasmic	874	889	0.80
Transmembrane Helix	890	910	0.92
Cytoplasmic	911	916	0.77
Transmembrane Helix	917	939	0.86
Non-Cytoplasmic	940	973	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPPLRFNQ KRTLEPSERE EPDSRLDESR PESSNRIPPS QSPSTVTQSD KPRKPSVTRR  60
   61 MSSKRTIPHK GQEFSTDDDV QEVEEDIAKQ QATNPQNSPR MRPLRKQSSS LRRRINARIN 120
  121 PLTRADPADN EDENTVLPAS SLEVAGNGTS SQHSEGGSQD SNDNNDEDVS DAESFTLKDR 180
  181 QQAINETHPF GIRLWKPALY KKSRSVEKTA EGDIHSSPGG RVGTMLFLTN LLWTAFFGWW 240
  241 LALAALIGSV ACFIFAYSPS AVEYGKVFSG LSWYLIYPFG SFVRLDTDEN YAEEDEGEGR 300
  301 SISEYEQWQN GDLEHGRLFF GPRRGRSLVG RRRNSIDSAS EQDSLLGRTQ RASSHDSPLG 360
  361 HHKRRLFGRG EWTLGRVVFF VFFYFLVGPL MLLVSLLCWL LVFWIPMGRV TIILFDHLRR 420
  421 HPLALSYHSD TSYTRLSPNS SSSILLCTYR AAGLRYWKYT VGGTNIFLIN LLGVVLFVIF 480
  481 DYFFLEKTLG VQNSLTHPGL IFTLALVSII PLAYFIGQAV ASISAQSSMG MGAAVNAFFS 540
  541 TVVEVYLYCV ALTEGKGQLV EGSIIGSIFA GILFLPGLSM CFGAIKRKTQ RFNVKSAGVT 600
  601 STMLMFAVIA AFGPTLFYQI YGSHELNCRP CFSTIDAGGS DCRRCYFSQV PAVNDSFFRK 660
  661 AVKPYSWFAA LFLFLSYIIG LWFTLRTHAA LIWATEIEEK KAAAVVQEHG PYEPRHLLQS 720
  721 GPPAAAGANA GPGPKGSTPA RHSNRGSTDP VKAVVEELDD IGLENGQTSG GHDAPNWSKA 780
  781 RSSIILLGAT VFYAIIAEIL VNTVDVVLES VDIDEKFLGI TLFALVPNTT EFLNAISFAM 840
  841 NGNIALSMEI GSAYALQVCL LQIPALVLFS AIYERLIDPA ELLTHTFNLI FPQWDMVSVI 900
  901 LCVFLLSYVY GEGKSNYFKG SILVLTYLVV VIGFYLSGYS NMDVMGVDRL DTLALGTSQT 960
  961 FHTLGRSKSG MAY