YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83775218
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.85
Transmembrane Helix	20	41	0.90
Cytoplasmic	42	66	0.80
Transmembrane Helix	67	87	0.88
Non-Cytoplasmic	88	92	0.68
Transmembrane Helix	93	113	0.92
Cytoplasmic	114	119	0.83
Transmembrane Helix	120	140	0.92
Non-Cytoplasmic	141	156	0.90
Transmembrane Helix	157	179	0.90
Cytoplasmic	180	188	0.83
Transmembrane Helix	189	211	0.91
Non-Cytoplasmic	212	224	0.80
Transmembrane Helix	225	246	0.93
Cytoplasmic	247	257	0.76
Transmembrane Helix	258	278	0.91
Non-Cytoplasmic	279	285	0.74
Transmembrane Helix	286	307	0.88
Cytoplasmic	308	663	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFSTLEARS DSGSGRPASY KAIGISLAVA SGLFIGVSFV LKKTGLLRAN VKYNEEAGEG  60
   61 YGYLKNFYWW AGMTLMIIGE LCNFVAYAFV DAILVTPLGA LSVVVTTILS AIFLKERLSF 120
  121 VGKVGCFTCI LGSVIIAMNA PEQSSVSNIQ EMQKYVIAPG FLSYAGVIIV GSIVTAVWAG 180
  181 PRYGKKSMFV YISICSSIGG LSVVATQGLG AAILAQINGE SQFKHWFLYV LFAFVVATLL 240
  241 TEIIYLNKAL NIFNAALVTP TYYVFFTSAT IITSAILFQG FKGTGMQIAT VILGFLQICA 300
  301 GVVLLQLSKS AKDVPDSAVF KGDLDQIREV ATQEEPETEP KADSIRGTAA IIRRISTPRR 360
  361 TMEAEEARRY LRERQEDKLH PPAENEIIEW DGLRRRKTVL GEGPTMTRSG TRTPSVKKPL 420
  421 PPLGMSRFPD ESERPNTRQS SRSFLDEIRM RSPSHSWQPI RDHDPSQPAA LAPMSSIHSS 480
  481 RGDTSYHGPA RSDTSHSITW ADEPPEPPAH GSKRQFSFHA FHRPKSDVPK SPRGILRKGH 540
  541 ERKPTEEERL GLVRGDSRDD MDEKLDRTYS NDSMEDELPS GAHTFTAAPP YQEHHFHSVE 600
  601 TSPQRPSRLI RNPLPPLPDE PPLEPYTQVE LGLPSYRRMS DASAGSLSSG PSRGWEQGGW 660
  661 RRP