YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169783908
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLPYVASG ISSFVVVTLS LFTLGQKIPR AAFVARCLAS YGSLLLCATY GVIASIVLRL  60
   61 VGYGRVSQWA TARSFKWVMR YTTGVHFDIV EGQEHLSTRP AVFIGNHQSE LDVLMLGSIF 120
  121 PPYCSVTAKK SLRHVPFLGW FMSLSRTVFI DRANRQTAVK AFDSAAEEMR NHRQSVFIFP 180
  181 EGTRSYSDKP GLLPFKKGAF HLAVKAGVPI VPVVSENYSH VLSPRNWRFN AGSIQVKVLP 240
  241 PISTEGLTAA DVDALTQSAR ESMLKTLLEM SEKNEIEVGN SHANGTSTAV EI

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.75
Transmembrane Helix	6	25	0.88
Cytoplasmic	26	36	0.68
Transmembrane Helix	37	58	0.83
Non-Cytoplasmic	59	292	0.79