YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169783098
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDESHLRQSM SHHPSPFNSP QPPHSHIPST LSYNEATTTA LEPQASQHRT GNTSDEEGQP  60
   61 PPRYTRENDP FQLASKIKTD EEIRQIHPQA NTARKRDSCG PGGLLRATKN PKKALDTAIS 120
  121 SRQLQGFYHS QNENIERMLK PVEEHVRDAR EISVNNQLKY KIAVYGSFAA NVILSVLQLY 180
  181 GAIASGSLSL FTTMADAVFD PMSNLTLLLC NKAVNRVDPR KFPAGKARIE TAGNICFCFL 240
  241 MTAVSFIIIA FSIRELVEGS QSETSDFHLP SVVAVIVAFC TKFALFVYCF ALRHQVSQIR 300
  301 ILWEDHRNDL FINGFGILTS VGGSKLRWWI DPMGAIILSV LVSCLWLYTA YHEFQLLIGV 360
  361 TADTKMQQLI TYISMTHSPF ITAIDTVRAY TSGPRLLVEV DVVMDPNDSL RATHDVAEEL 420
  421 QMKLESLPDV ERAYVHVDYE TTHKPEHFLK KEL

Type	Start	End	Confidence
Cytoplasmic	1	161	0.92
Transmembrane Helix	162	184	0.78
Non-Cytoplasmic	185	189	0.65
Transmembrane Helix	190	211	0.70
Cytoplasmic	212	230	0.89
Transmembrane Helix	231	253	0.91
Non-Cytoplasmic	254	268	0.90
Transmembrane Helix	269	292	0.89
Cytoplasmic	293	327	0.77
Transmembrane Helix	328	350	0.85
Non-Cytoplasmic	351	453	0.49