YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83774628
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRFMNILRK PGAKPEIQGV APTQHLAGKE TLDHPNAKGY IPKSKPKMLD RWLDFVVRVS  60
   61 GSEPVFFLIL AGLLTWALLG IKYGSTDSWQ VLISDIQAIV SYIFDSFLVR QQLNAYEEEM 120
  121 VVAAELESRI LSHKRMLAKL HQTLEAQDQE KTTQLVNLVK KHQNALEFGT ELPTETRFGR 180
  181 TITWISHVIG HLGTITLFWA GVFTWIALGH RSHYSDKWQL YMNSASSALM VFIFAFLANI 240
  241 RERHAAYTRS CLDAIFQVDA SLEAKLRHLT DDTLPNDIVI IPAPRVSKIQ RAIFYYADFV 300
  301 GTLVGIAILV AVIIIWIAIG PLLHFDSNWW LLIGTYAGLI GMNDGFVLRN MQARLRCYVD 360
  361 AEFARITAQD ATLFATAGIP APSDEVVRGA SLTRRVSETM GRVCAHEITV VLGFLTILGL 420
  421 IAGASAMRWT MTGQLLCNVP PSLIESFFMI VLVTGHNSAD DRIRVDLRNT YARRLQLLGF 480
  481 VHAVQSVW

Type	Start	End	Confidence
Cytoplasmic	1	54	0.72
Transmembrane Helix	55	80	0.71
Non-Cytoplasmic	81	88	0.50
Transmembrane Helix	89	109	0.55
Cytoplasmic	110	186	0.97
Transmembrane Helix	187	208	0.91
Non-Cytoplasmic	209	219	0.86
Transmembrane Helix	220	240	0.93
Cytoplasmic	241	294	0.98
Transmembrane Helix	295	319	0.92
Non-Cytoplasmic	320	328	0.82
Transmembrane Helix	329	348	0.94
Cytoplasmic	349	402	0.98
Transmembrane Helix	403	426	0.87
Non-Cytoplasmic	427	438	0.68
Transmembrane Helix	439	458	0.71
Cytoplasmic	459	488	0.77