YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169781718
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSASRRKIL DGLNRRYIYG RLPLLHSIIF LIEMAVAMRL AAKFNSYYAE KPVLTTMVTN  60
   61 AVLGGVADTV AQLITAFKAR PGRPNYDPGD LISIEIHDLD KEKPPALGEL GHARHLPPPF 120
  121 DFERLTRFMS YGFFMAPIQF KWFGFLSRAF PLTKKNPTIP ALKRVAVDQF LFAPFGLVCF 180
  181 FTFMTLAEGG GRRALTRKFQ DVYLPTLKAN FVLWPAVQVL NFRVVPIQFQ IPFVSSIGIA 240
  241 WTAYLSLTNS SEED

Type	Start	End	Confidence
Cytoplasmic	1	16	0.97
Transmembrane Helix	17	41	0.84
Non-Cytoplasmic	42	53	0.88
Transmembrane Helix	54	75	0.67
Cytoplasmic	76	124	0.73
Transmembrane Helix	125	145	0.75
Non-Cytoplasmic	146	169	0.57
Transmembrane Helix	170	190	0.87
Cytoplasmic	191	223	0.54
Transmembrane Helix	224	245	0.61
Non-Cytoplasmic	246	254	0.39