YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83773994
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.98
Transmembrane Helix	33	55	0.93
Cytoplasmic	56	63	0.85
Transmembrane Helix	64	84	0.94
Non-Cytoplasmic	85	122	0.95
Transmembrane Helix	123	144	0.92
Cytoplasmic	145	150	0.86
Transmembrane Helix	151	173	0.85
Non-Cytoplasmic	174	187	0.87
Transmembrane Helix	188	208	0.91
Cytoplasmic	209	224	0.91
Transmembrane Helix	225	244	0.91
Non-Cytoplasmic	245	254	0.72
Transmembrane Helix	255	276	0.95
Cytoplasmic	277	283	0.92
Transmembrane Helix	284	303	0.93
Non-Cytoplasmic	304	309	0.68
Transmembrane Helix	310	329	0.91
Cytoplasmic	330	340	0.85
Transmembrane Helix	341	361	0.93
Non-Cytoplasmic	362	393	0.87
Transmembrane Helix	394	413	0.90
Cytoplasmic	414	478	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEYPVAYNG SATGTGGDSL TEDLNIYYSS GDIAWVIVST ALVLLMIPGV GFFYSGLARR  60
   61 KSALSLLWLS IMSVGIVSFQ WFFWGYSLAF SHTAGKYIGD LSNFGFKGVL GAPSVGSAKV 120
  121 PDLLFAVFQG MFACITVALA VGAVAERGRM LPCMVFSFVW STIIYDPIAC WTWNSSGWVA 180
  181 NLGGLDYAGG TPVHIASGCT ALAYSLMLGK RRGHGTHELN YRPHNVTHVV IGTVFLWVGW 240
  241 FGFNAGSALS ANLRAVMAAV VTNLAAAVGG VTWCILDYRL ERKWSTVGFC SGVIAGLVAI 300
  301 TPASGFVTPW ASFIFGVVGA VACNYATKLK YVIKVDDALD IFAVHGIGGL VGNLLTGLFA 360
  361 ADYIAHLDGS TTIDGGWINH NYIQLAYQLA DSVTGMAYSF FGSCIILFII NLIPGLSLRA 420
  421 PEEDEIMGID DAEIGEFAYD YVEITRDVIS AANSESGENA SKRSLTPTGN ETTIEAKA