YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83773934
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIRGTAGY NLGHQNPFGG PGRADATSDP SPLDAIREQT SKIEDWLDTL ADPVKPYLPA  60
   61 IGRFLIVVTF IEDSLRIITQ WSDQLLYLRE YRKIPWGITH TFLILNVLAM SICSFLVIAR 120
  121 KHTEIAVAGL LGVVVTQGLG YGLIFDLNFF LRNLSVIGGL LMVLSDSWVR KKFVPAGLPQ 180
  181 LDEKDRKMYV QFAGRVLLIF LFVGFVFSGQ WSFWRILVSL FGLVACVMVI VGFKAKWSAI 240
  241 ILVVLLSVFN ILVNNFWTLH PHHPHKDFAK YDFFQILSIV GGLLLLVNMG PGQLSMDEKK 300
  301 KVY

Type	Start	End	Confidence
Cytoplasmic	1	59	0.70
Transmembrane Helix	60	78	0.38
Non-Cytoplasmic	79	95	0.62
Transmembrane Helix	96	118	0.91
Cytoplasmic	119	124	0.60
Transmembrane Helix	125	145	0.78
Non-Cytoplasmic	146	148	0.75
Transmembrane Helix	149	169	0.78
Cytoplasmic	170	187	0.94
Transmembrane Helix	188	207	0.91
Non-Cytoplasmic	208	212	0.73
Transmembrane Helix	213	233	0.91
Cytoplasmic	234	239	0.78
Transmembrane Helix	240	259	0.94
Non-Cytoplasmic	260	272	0.82
Transmembrane Helix	273	292	0.92
Cytoplasmic	293	303	0.87