YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169780662
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVPVIGRL FWFEYLALFA SLILVLLEWV IHIITFCLPE TVIKFFYDRS KTIFNLFITP  60
   61 EDEGKRSKEE RIATAVAQAS DFVDICALFG YQTEEHIVQT GDGYLLGLHR LAYRRGEEKM 120
  121 RVNQGKGGVR KKVVFLHHGL MMCSEVWVCL SEEQRCLPFQ LVERGYDVWF GNNRGNKYSK 180
  181 KSVRFSPGSN EFWDFSIDQF AFHDIPDSIN YVLEVTGQPS LSYVGFSQGT AQAFATLSIH 240
  241 PLLNQKVDVF VALAPAMAPT GLPNHFVDSL MKASPNFLFL LFGRRSILSS TTMWQTVLYP 300
  301 PIFVQIIDKC LDGLFNWKCR NISRWQKLAG YLHLFSFTST KSVVHWFQII RHKNFQFYDD 360
  361 EVHAPFSIVA SERFYKPVKY PTRNIKTPIV LLYGGNDSLV DINVMLKELP RGITAKIIPK 420
  421 YEHLDFLWAT DVEQQVFSHV FEALEQYSGI TQLEGAVTGL INGDAGHAIA V

Type	Start	End	Confidence
Cytoplasmic	1	10	0.90
Transmembrane Helix	11	33	0.89
Non-Cytoplasmic	34	471	0.95