YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169780164
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.99
Transmembrane Helix	62	83	0.91
Non-Cytoplasmic	84	90	0.76
Transmembrane Helix	91	112	0.84
Cytoplasmic	113	128	0.88
Transmembrane Helix	129	149	0.91
Non-Cytoplasmic	150	167	0.89
Transmembrane Helix	168	190	0.89
Cytoplasmic	191	200	0.81
Transmembrane Helix	201	223	0.86
Non-Cytoplasmic	224	243	0.88
Transmembrane Helix	244	265	0.88
Cytoplasmic	266	358	0.77
Transmembrane Helix	359	381	0.89
Non-Cytoplasmic	382	394	0.80
Transmembrane Helix	395	417	0.85
Cytoplasmic	418	424	0.82
Transmembrane Helix	425	448	0.84
Non-Cytoplasmic	449	505	0.96
Transmembrane Helix	506	530	0.85
Cytoplasmic	531	548	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSNIEMRKR DTSIESTSSA QASRIMSRSS FSLDHDPPVT PQTPGLTTTS FSNLPRSDKR  60
   61 NFLLLCVLYF LQGVPMGLAT GSVPFLLKPY LSYGQIGVFS LASYPYSLKL LWSPIVDAVW 120
  121 SRRFGRRKSW ITPVQVIAGL AMIYMGGRIG DMMVQAGANG GAGVWNFTYW WFLLVFFCAT 180
  181 QDIAVDGWAI TLMSPPNISY ASTAQTVGLT AGHFLSYTVF LAFNSQDFAN RWFRSIPGEG 240
  241 GLLSLGTYLT FWGWAYLVVT TCLAIMKKED KTHDRDSISD VYKSMWSVLK LKNVQTIILV 300
  301 HLIAKIGFQA NDGVTSLKLL DKGFGQDNMA LVVLIDFPFE IGLGYYAGKW STEYTPMRLW 360
  361 CWAFMGRLAA AVLAQLTVMI YPSGSEVPFW YMLTVIGEHV LSTFMNTVMF VAVSAFHARI 420
  421 SDPAIGGTYM TLLATVSNLG GTFPRYFILK LVDMFTEATC IPPSVPPAAD QLKGELVTAP 480
  481 FSCALEPDKN RCTNGGGSCQ TIHDGYYTTN ILCVLIGTVT FFMFIRPAVL KLQGLPLRAW 540
  541 RLSPNSRQ