YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169779988
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKARAVPASG LVLPSRVTPA TSICWQCLRN DLISIQINSQ TRAYHPTRRK FASPFGAAVT  60
   61 AAQTLLKGLP KAPPGISVDP LRIVGKELKF LTKNIRQLLG SGHPTLDKVA KYYTKSEGKH 120
  121 MRPLLVLLMS QATALTPRHG RWSSSPSYTV NDPISSPSVL ADTNPDLNPL VSSSAEAKYD 180
  181 FAGDENILPT QRRLAEITEL IHTASLLHDD VIDNAVTRRS SSSANLQFGN KMAVLAGDFL 240
  241 LGRASVALAR LRDPEVTELL ATVIANLVEG EFMQLKNTAS DEKNPVFTDE TISYYLQKTY 300
  301 LKTASLISKS CRAAALLGDS TPQVVEAAYA YGRNLGLAFQ LVDDMLDYTV SDAELGKPSG 360
  361 ADLELGLATA PLLFAWKQNP ELGPLVGRKF SREGDVQRAR ELVYQSNGVE KTRVLAQEYA 420
  421 DKAKAAISSF PDSEAKDGLL QMCEKTMNRR K

Type	Start	End	Confidence
Signal Peptide	1	19	0.95
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	451	0.99