YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83766388
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.75
Transmembrane Helix	7	24	0.88
Non-Cytoplasmic	25	31	0.72
Transmembrane Helix	32	52	0.91
Cytoplasmic	53	63	0.81
Transmembrane Helix	64	83	0.83
Non-Cytoplasmic	84	139	0.87
Transmembrane Helix	140	162	0.83
Cytoplasmic	163	172	0.85
Transmembrane Helix	173	193	0.95
Non-Cytoplasmic	194	205	0.74
Transmembrane Helix	206	225	0.95
Cytoplasmic	226	233	0.80
Transmembrane Helix	234	250	0.88
Non-Cytoplasmic	251	272	0.81
Transmembrane Helix	273	291	0.76
Cytoplasmic	292	297	0.49
Transmembrane Helix	298	322	0.79
Non-Cytoplasmic	323	359	0.76
Transmembrane Helix	360	382	0.80
Cytoplasmic	383	403	0.82
Transmembrane Helix	404	425	0.71
Non-Cytoplasmic	426	441	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLFRVLSSA FFLSVTVSSI PLAFDVGGKT CGLAFSLSLA TFYFLFSLLK LTTPERSWLR  60
   61 ASLITIIRST QWIIIPVLLI WSLNRFSIDA DNTTGWAERT FTGKRAQNTS VQAWLFGPGG 120
  121 LVESVTIGNW DNLLRWSTPV FQLVEGFCSL LVIQAAGQIT RWLVNRGGRS DSWMIGLLVF 180
  181 SGSAISSAVY FLWRVLQFPG ISNVDAALIG VSITCAVILC AWGIGSGRGN PVESSLLFAY 240
  241 IVLCIYQIFT DYQPSYPVEQ APSPAQAGDF PPLPPIFMAS YTTLLHALSL LPSIIHAAFN 300
  301 VISAVFGAVT PSVLISLAYR ICVLYASTRI IPAVRESGAR ALSQEASLDD SDAAGQFLGL 360
  361 LSYFSPSILI AVYTSLLMQH FASTSQAMGG NGEWWSSQRG GGGNLWRWVN LACTMALYAV 420
  421 ELWLGENDDL DSGLASHWKT D